Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun372g00087 ATGACAAGGAAGAAGGTGGATCTGACATATATAAAGAATGATTCAAAGAGGAAGACAACACTAAGCAAAAGGAAAAATGGTTTAGTGAAGAAGATTAATGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATAATTTACACTCCAGATAATCCTCAGCCAGAGGTTTGGCCATCTGAAAGTGGAGTCCAGAGTGTTCTTTCCAGGCTTAGGGGAGTGTCTGAACTGGAGAAAGGCAAGAAAAAGTTGTGTCAAGAGAGCTTTTTGAGGCAGAGGATCATCAAAGCCCAAGCACAACTGAGGAAACTGAGGAATGAAATAAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAAGAACAATTTTGACAATTCAAGAATGATTGATCTCAATGATATCTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACTATATCAGTATAAGCCAAGCCCAAAAGGTGAAACCTTTTGTTGACAATGGAGGAGAAACCATGAGTTCATTTGTGAATCATGTCAAAGGGTATGAGACCAATGTAGAGGCCATTCAAAATGATGTTTTGTCTATGGACCTTATCAATGACAATGGTGATGAGATAAAACCATAG 627 0.378 MTRKKVDLTYIKNDSKRKTTLSKRKNGLVKKINEINILCGIEACAIIYTPDNPQPEVWPSESGVQSVLSRLRGVSELEKGKKKLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNAKNNFDNSRMIDLNDISNLIDQNLEKIENYISISQAQKVKPFVDNGGETMSSFVNHVKGYETNVEAIQNDVLSMDLINDNGDEIKP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun372g00087 208 PANTHER MADS BOX PROTEIN 3 151 - -
Phacun372g00087 208 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phacun372g00087 208 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Phacun372g00087 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phacun372g00087 208 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Phacun372g00087 208 Coils Coil 87 114 - -
Phacun372g00087 208 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Phacun372g00087 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phacun372g00087 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phacun372g00087 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phacun372g00087 208 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Phacun372g00087 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun372g00087 1 155 Type I MADS-box Gene Family AT5G48670 50.323 8.16e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phacun372g00087 SRF-TF 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun372g00087 - - vum:124845341 347.436