Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun25g00005 ATGGCAAGAGAAATGGTTGGCATAGGATGCATGGCGGGAGTAGGAGTTTATCACCCCAGCTGGCTACATCATCGAATTCGAATTATCTCTTCTAAATCTGAAGAAGAAGCAGTAAAAGTAACACGGTGGTGCTCGTTGTTCTCTGTTTCTGGATACGAGACTCGTCATCGGTGCAGGCCCAGGCCCAGGCCCAGGCGTCCGTGTTGTTTGCCTGAGGGTAGAGACGGTGGGGAGGAGGGAACCTCTACTTCGGAGCGACTAGAGTTAGAGTGGAAGCTCCTCAGCAGAAGGATTGGAGATTCCGGAATATTTTCTTCGTGTTTGGTCGGTCTCCTCACCGGCGTCGCTGTCGTGCTCTTCAATTATGCTGTCCATGAAATTCGTGATTTGTTCTGGGATGGGATTCCCAATCGAGGTGCCTCATGGTTGAGAGAAGCGCCGATTGAGACAACATGGGCACGTGTAGTACTAGTTCCGGCTTTGGGAGGCGCCACCGTGTCTTTGCTAAACCTCCTTCGTACACGTTTTGATTCCTCTCTCCAACAAGATCCTTTACTCCGAACACCTTCTGCCTACCTCAAGTCTGCTTCCCGCCCTTTGCTAAAGGCCATGGCAGCTTCTGTTACTTTAGGCACCGGCAATTCCTTGGGTCCGGAGGGTCCCAGCGTGGACATTGGCACTTCCATTGCCAGAGGCCTCGGTCCTTTCTTTCACAATGGAATGAGTTCCGGCAGAATGCTCTCCCTTCTCGCTGCTGGATCTGCCGCTGGCCTCTCTGCCGGTTTCAATGCTGCTGTTGCCGGTTGCTTTTTTGCTGTCGAGTCTGTCTTGTGGCCATCGCCTGCAAATGCATCTTTACCACTTACAAATAATACTTCCATGGTCATTCTAAGTGCTGTCATAGCTTCTGTTGTTTCTGAGATTGGCCTTGGCTCTCAACCAGCCTTTAAAGTTCCAGATTATGACTTCCGGTCTCCCGGTGAGCTCCCGCTGTATCTATTGCTGGGTATTTTATGTGGCCTGGTGTCATTGGCCCTATCTAGGTGTACGTCATATATGTTGACTATTGTTGACAATCTGCACAAGGCCACTGGCATTCCAAGAGCTTCATTCCCTTTATTGGGAGGCTTATCGGTTGGGTTGATAGCATTGATATATCCTGAAATCCTCTACTGGGGTTTTGAGAATGTTGACATTTTATTAGAATCTCGGCCATTTGTTAAAGGCCTTTCCACTGATCTATTGCTTCAGCTAATAGCCGTCAAGATAGTTGCAACTTCTCTGTGCAGGGCTTCTGGATTAGTGGGGGGGTATTATGCCCCGTCTCTCTTTATTGGTGGTGCAACTGGGATGGCTTATGGAAAATTAATTAATTTTGCTTTTGCTGAGTCTAATCCCATGATTAACCTCTCTGTGTTTGAAGTGGCATCACCACAAGCTTATGGCCTGGTTGGAATGGCTGCAACTCTTGCAGGAGTTTGTCAAGTGCCACTTACTGCAGTTTTGCTTCTGTTTGAATTAACACAGGACTATCGGATTGTTCTACCACTGCTTGGAGCTGTAGGGTTGTCTTCGTGGATTTCATCTGTACAGACAAAAAGAGATGACAGAGGGTCAAAAAAGGTTGAATTGGAAAATTCAAATTCTACTTCACTTTCTGAAATATCCTCTCCTAGTTCAATTGAGTCATCTGCTGGCAATACCTTTGATGCGCCATATATGACTAATTTGTGTCAAGTGGAAAGTTCTCTTTGTGTAGAGGATGATACTGTTGAAACAGCATATATTGTAAGGAGAACATTTGTTTCAGAAGCCATGAAGACGAGATACGTGACGGTTTCAATGTGCACACTACTTACAGAAGTAATAGATCTCATGATTGCAGAGAAACAGTCCTGTGCAGTAATTGTTGATACTGATGATACATTAATCGGTTTCTTGACACTTAGAGACATTCAAGAGTATGGTAAATTTGCAAAAGCAAGAAGCAAAAAACACAAGGGGCTTTTAGTTTCTGAATTATGCCTTTTAGATGGAGAAATATGCAACGTACCATGGACAGCTACACCTGACATGGAACTTCTTTATGCTCAAATGATTATGAAGGAGCGCGGATTCAATCAAGTTCCAGTCGTGAGGAATATCTATGAAAGAACGTATCCAGTTGGCATTATAGACCCTGAGAGTATCAGTCTAACATGCAGTGCTTTAGCCACCAGACAAACCCTCAGCTAA 2235 0.4555 MAREMVGIGCMAGVGVYHPSWLHHRIRIISSKSEEEAVKVTRWCSLFSVSGYETRHRCRPRPRPRRPCCLPEGRDGGEEGTSTSERLELEWKLLSRRIGDSGIFSSCLVGLLTGVAVVLFNYAVHEIRDLFWDGIPNRGASWLREAPIETTWARVVLVPALGGATVSLLNLLRTRFDSSLQQDPLLRTPSAYLKSASRPLLKAMAASVTLGTGNSLGPEGPSVDIGTSIARGLGPFFHNGMSSGRMLSLLAAGSAAGLSAGFNAAVAGCFFAVESVLWPSPANASLPLTNNTSMVILSAVIASVVSEIGLGSQPAFKVPDYDFRSPGELPLYLLLGILCGLVSLALSRCTSYMLTIVDNLHKATGIPRASFPLLGGLSVGLIALIYPEILYWGFENVDILLESRPFVKGLSTDLLLQLIAVKIVATSLCRASGLVGGYYAPSLFIGGATGMAYGKLINFAFAESNPMINLSVFEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSVQTKRDDRGSKKVELENSNSTSLSEISSPSSIESSAGNTFDAPYMTNLCQVESSLCVEDDTVETAYIVRRTFVSEAMKTRYVTVSMCTLLTEVIDLMIAEKQSCAVIVDTDDTLIGFLTLRDIQEYGKFAKARSKKHKGLLVSELCLLDGEICNVPWTATPDMELLYAQMIMKERGFNQVPVVRNIYERTYPVGIIDPESISLTCSALATRQTLS* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun25g00005 744 CDD Voltage_gated_ClC 110 525 - -
Phacun25g00005 744 MobiDBLite consensus disorder prediction 544 563 - -
Phacun25g00005 744 FunFam Chloride channel protein 586 733 - -
Phacun25g00005 744 SUPERFAMILY CBS-domain pair 596 730 IPR046342 -
Phacun25g00005 744 FunFam Chloride channel protein 95 543 - -
Phacun25g00005 744 ProSiteProfiles CBS domain profile. 606 662 IPR000644 -
Phacun25g00005 744 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 731 - -
Phacun25g00005 744 Gene3D - 585 732 IPR046342 -
Phacun25g00005 744 Gene3D Clc chloride channel 92 542 - -
Phacun25g00005 744 PRINTS Chloride channel signature 434 454 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phacun25g00005 744 PRINTS Chloride channel signature 497 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phacun25g00005 744 PRINTS Chloride channel signature 202 221 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phacun25g00005 744 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phacun25g00005 744 PRINTS Chloride channel signature 479 495 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phacun25g00005 744 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 100 737 - -
Phacun25g00005 744 Pfam CBS domain 602 654 IPR000644 -
Phacun25g00005 744 SUPERFAMILY Clc chloride channel 97 531 IPR014743 -
Phacun25g00005 744 Pfam Voltage gated chloride channel 195 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phacun25g00005 744 SMART cbs_1 684 735 IPR000644 -
Phacun25g00005 744 SMART cbs_1 609 657 IPR000644 -
Phacun25g00005 744 MobiDBLite consensus disorder prediction 537 563 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun25g00005 106 276 Ion Channels AT3G27170 29.082 8.88e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun25g00005 K03281 - gmx:100812959 1124