Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun250g00054 ATGAACATGATTTCTGTTATCTGTTTCAATTTTGAGATTATTTTTGTGATTGTTCTTGCACTTTTCGTACACATATCATCTCAGCTTGGTTCAAAGGTAGAAGTGCTTCCTGGATTTGAAGGGCCTCTTCCTTTTGAACTCGAAACAGGGTATGTAGGATTGGGAGAAACAGATGATGACAAGCAAGTGTTTTACTACTTTATCAAGTCAGAAAATGATCCTGCAAAAGATCCTCTTATGCTTTGGCTCACTGGAGGCCCTGGTTGCTCTTCATTTTCTGGGCTTGCTTTTCAAATTGGTGCATTTGGATTCAAGAGTGAGGAGTATGATGGGAGCGTGCCAAATTTGTACTTGAGGCCACAGTCATGGACTAAGGTATGTAGCATTGTTTTTGTAGATTTGCCTTTTGGAACAGGCTTCTCGTATGCAACAAATCCCACTGCTCATAGGAAGGACTGGAAATTAGTTCACCATACCCATCAATTTCTTAGGAAGTGGCTGATTGATCACCCAGAATTTCTTTCAAATGACTTTTACTTGGGAGCTGATTCATATTCTGGCATACCTGGCCCTGCCATTGTTCAAGAAATTTCAAAGGGAAATGAAATGGGTCTTCAACCACCAATAAATCTCCAGGGATATCTACTGGGGAACCCCCTAACAACACGAAAAGAAAAAAATGACCAAATCCCATTTTCTCATGGAATGGGGCTTATTTCTGATGAACTATATGAGTCACTGAAGAGGAATTGCAAAGGAGAATATATAGATGTAGATTCTAGAAATGAATTGTGTTCAAGAGATCTCAACTACTATGATGAGTGCCTTTCAGGAATTAACGAGTTCAACATTTTGGATCTCTATTGCAAAGATAATTTTACTAAGAAACATGAAGGTCCATGGAGAAGATCTCTGAATCAGAAGTTTGAGTCCTCTCTCAATTCTCATCTCACAGAGTTAGACACAAGATGCCAAATATATGGTTTTTTCCTTGCCACTCAATGGGCCAATGATGAGAGTGTTCGCAAAGCACTGCACATTCGAGAGGGAACAAAAGGCAAATGGGAACGTTGTTGGATTGGTGATTTTGAGTATGAGATCTCTAGCAGCTTCGAGTTTCATTTAAATCTCAGTGCTAAAGGATATCGTTCTCTAATATATAGTGGGGATCATGATGCAGTTGTTCCTTTCATGTCGACTCAAGCATGGATCAGAGCTCTAAACTACTCCATTGTAGACGATTGGAGGCCATGGCTTCTTGAAGGCCAAGTTGCAGGATACACAAGAACATACTCTAATCAAATGACATTTGCAACTGTGAAGGGTTCAGGACACACAGCTCCTGAGTACAAACCTGATGAAGGTTACGCCATGTTCAGTAGATGGATAGCCAGAAAGCCTTTGTAG 1407 0.403 MNMISVICFNFEIIFVIVLALFVHISSQLGSKVEVLPGFEGPLPFELETGYVGLGETDDDKQVFYYFIKSENDPAKDPLMLWLTGGPGCSSFSGLAFQIGAFGFKSEEYDGSVPNLYLRPQSWTKVCSIVFVDLPFGTGFSYATNPTAHRKDWKLVHHTHQFLRKWLIDHPEFLSNDFYLGADSYSGIPGPAIVQEISKGNEMGLQPPINLQGYLLGNPLTTRKEKNDQIPFSHGMGLISDELYESLKRNCKGEYIDVDSRNELCSRDLNYYDECLSGINEFNILDLYCKDNFTKKHEGPWRRSLNQKFESSLNSHLTELDTRCQIYGFFLATQWANDESVRKALHIREGTKGKWERCWIGDFEYEISSSFEFHLNLSAKGYRSLIYSGDHDAVVPFMSTQAWIRALNYSIVDDWRPWLLEGQVAGYTRTYSNQMTFATVKGSGHTAPEYKPDEGYAMFSRWIARKPL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun250g00054 468 Gene3D - 327 468 - -
Phacun250g00054 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Phacun250g00054 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Phacun250g00054 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Phacun250g00054 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Phacun250g00054 468 SUPERFAMILY alpha/beta-Hydrolases 36 467 IPR029058 -
Phacun250g00054 468 Pfam Serine carboxypeptidase 37 464 IPR001563 GO:0004185|GO:0006508
Phacun250g00054 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 452 IPR001563 GO:0004185|GO:0006508
Phacun250g00054 468 FunFam Carboxypeptidase 323 467 - -
Phacun250g00054 468 Gene3D alpha/beta hydrolase 26 299 IPR029058 -
Phacun250g00054 468 FunFam Carboxypeptidase 371 465 - -
Phacun250g00054 468 FunFam Serine carboxypeptidase-like 11 27 468 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun250g00054 27 56 Calmodulin-binding Proteins AT2G22960 66.667 3.45e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun250g00054 K16296 - gmx:100780069 811.986