Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun250g00052 ATGTTGAGCCGCGCGTCGAATGTTTCGGCCGAAGTGGTTGGTTGGGGTGAGGGTGAGGATGAGCTGTATGAGCAGCTGTGGAAGGCTTGCGCGGGACCACTGGTGGATGTTCCTCGTGCTGGCCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCAGCTTCCCACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTCCCGGAATCTAATCAAGATGAGCCTACAAGTGCTGATACGTGCACTGCTGAACCTCCAAGGGCACCGGCTCACTCGTTCTGCAAGGTTTTGACTGCTTCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACCGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGGTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTCACGACTGGTTGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCTGGAGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTCGGAGTGAGACGTCTAGCTCGCCAGGCCAGTAGCATGCCTTCATCGGTGATTTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCTTCTCATGCTGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTTATCATAGGTGTGAACAGGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCATGGGAAATAGAGCCATTTGTTGCTTCTGCTTCTACACCCTCAGTTCAACCCACTATTGTAAAGACTAAAAGGCCCCGACCATCCAGCGAAGTTCCAGATGTTGATACAACATCCGCTGCTTCTGTTTTCTGGGATACCGATCTGCCACAGCCTGATACCACACAAATCAATGTTTTGGCCGAAAGCAAACAGAATGACAAAACTGGTTCATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTGTCCTCTCCCCATTCCAGTTGTCCATCTCATTTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCAGGTTGGCCTGTTTCAAAGCCTCATTCGTCCAGATTGAGCAATGAGCATGTGCTTGACCAAGCTGATAAGGAGAGCAAAGTTGAGACTGCTGCAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACTCACCTGCTGTAGAGAAGGCATCTCCGCATGCAGTAAATGTAGCCAAAGTTACTACTGAAGGATGTACTAGCACCTTGTCCCAAACAGATGCTGGCCATATGTCAGAGGTACCAAATTCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTATCTCCGAAGGAGACTCAGAGCAAGCAAGTTTCTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAACAATTTTGGATGGGTATGATAAACTTATAAATGAATTGGAGGAGATGTTTGACATAAAGGGACAGCTTCAATACAGGAATAAGTGGGAAATTGTCTTCACCGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGAAGAATCTTCATTTGTTCGAGTCAGGATGTGAAGAAGATGAGTTGTGGAAGCAAACTGCCAATCTCTTCAGTGGAAGATGGGACTGTAATAAGCTCAGAAACAACTGAAACCTGA 2082 0.4606 MLSRASNVSAEVVGWGEGEDELYEQLWKACAGPLVDVPRAGQRVFYFPQGHMEQLEASTNQELNQRIPLLQLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSADTCTAEPPRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNRYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASASTPSVQPTIVKTKRPRPSSEVPDVDTTSAASVFWDTDLPQPDTTQINVLAESKQNDKTGSWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSHLFQDTTDDSKSVSGWPVSKPHSSRLSNEHVLDQADKESKVETAASYRLFGIDLIDHSRNSPAVEKASPHAVNVAKVTTEGCTSTLSQTDAGHMSEVPNSSSKERKQEQQQVSPKETQSKQVSRSRTKVQMQGVAVGRAVDLTILDGYDKLINELEEMFDIKGQLQYRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMSCGSKLPISSVEDGTVISSETTET* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun250g00052 693 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Phacun250g00052 693 MobiDBLite consensus disorder prediction 416 487 - -
Phacun250g00052 693 MobiDBLite consensus disorder prediction 543 586 - -
Phacun250g00052 693 Gene3D - 288 363 - -
Phacun250g00052 693 FunFam Auxin response factor 125 229 - -
Phacun250g00052 693 FunFam Auxin response factor 577 670 - -
Phacun250g00052 693 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Phacun250g00052 693 FunFam Auxin response factor 288 361 - -
Phacun250g00052 693 CDD B3_DNA 125 227 IPR003340 GO:0003677
Phacun250g00052 693 Pfam AUX/IAA family 628 666 IPR033389 -
Phacun250g00052 693 Pfam AUX/IAA family 561 618 IPR033389 -
Phacun250g00052 693 SUPERFAMILY CAD & PB1 domains 583 658 - -
Phacun250g00052 693 MobiDBLite consensus disorder prediction 570 586 - -
Phacun250g00052 693 SMART B3_2 127 229 IPR003340 GO:0003677
Phacun250g00052 693 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
Phacun250g00052 693 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phacun250g00052 693 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Phacun250g00052 693 Gene3D - 124 228 IPR015300 -
Phacun250g00052 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phacun250g00052 693 MobiDBLite consensus disorder prediction 416 483 - -
Phacun250g00052 693 Gene3D - 577 670 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun250g00052 18 675 B3 DNA Binding Superfamily AT4G23980 58.761 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phacun250g00052 B3 7.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun250g00052 K14486 - gmx:100779003 1236.48