Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun250g00045 ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAGCAAAGCAGAAGAGATAAGCTAAGAGTTGTGGTGACACAGAACCAACATGGTCTCGTTGAACCCTCCACTTTGCTTCCTTTGTACGACCCTTCTTCGTTCATATCCTCTGAGTTGCTAACCAGCTTCCACAACACCCACAAACACAACTTGGGTTGTGGTGTGAAGGAAGAACGTGCAAATTTGATGATGGGTTTTGGAGGTGGAGGCGTCATCAACAATGGCTCTTCTTCTTCTTCGTGTTGTTCTTCTAACTCCTCTTCGGTTTCTTATTTGGATCCTGAGTCGTCGTTGCCTCTGAACCAAGCCACAATTCAGGTTATTAACAATAACAACAACATGTTTCTTTACCAAGCACAGAACCTGGGAGAGTTTGATCAGGGTTATAATAATAATAATGGTAGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTGTCATCACATAACAACGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTATGGTGATAAGGTTGGTGGGGTTGGTGGTGGTGGATGTGTGGCTTATGGTGGTTCTGGTTTGAATGAAGTTTCGAGGTGCACGGTGCCTATGGGGCCATTTACTGGTTATGCTTCTATATTGAAGGGATCGAGGTTCCTGAAGCCTGCGCAGCAATTATTGGAAGAGCTATGTGATGTTGGTGGAGTTTGTGCTGAGAACATGGTGGCTGATGCATCGTTGATGGAACCTATTCCTCTTCCTCCTCCTCAGAGTTCAAGTGAAGATCTATTAGGGGATCAAGGGGGTGACCAGGGTCGCAAAAAGTCAAGACTGTTAACTATGCTTGATGAGGTTTACAGGAGGTACAGACAATACTATCAGCAGATGCACGCAGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCCTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAAAATGCAATTACTGACCAACTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTTCAAGGTTTGGCAACAGTGATAGAGGCCCATACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGCGCTGTGACCGTTCTCAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCTACTGATACAGACAAGATAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAGACACGGCAGGCTCAAAAGAATTCACAGAAGGAAGAACATTGCAGGAACAAGTCAAGTGATCAATTACCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTGGGTCAACAGAAAAGTTTCAGGATGCTCCTTACAAGCGAGCTACAGAAGAACTTCCTAACATATCAGTTAGGACTCAGGAACAGCTGAATCTTGCCTGCACAAACAATCAGCCAGGTGGTGTTGGAGTGAACATGGGTGGCAGTGCAAGCAATAGTGTGTCACTCACACTTGGACTTTATCAAAATCATGGTATTGGGTTGGCTGAACCTTTTACCTTGAATGCAGCACAGCGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTGATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAGGACAACTGTTGCATGATTTTGTAGGCTGA 1794 0.4454 MAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSELLTSFHNTHKHNLGCGVKEERANLMMGFGGGGVINNGSSSSSCCSSNSSSVSYLDPESSLPLNQATIQVINNNNNMFLYQAQNLGEFDQGYNNNNGSEIMVFKPEPLSLSLSSHNNGVNLQRYGSVVYGDKVGGVGGGGCVAYGGSGLNEVSRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAENMVADASLMEPIPLPPPQSSSEDLLGDQGGDQGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESSRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNSQKEEHCRNKSSDQLPSDNSIVSENPSGSTEKFQDAPYKRATEELPNISVRTQEQLNLACTNNQPGGVGVNMGGSASNSVSLTLGLYQNHGIGLAEPFTLNAAQRFGVALETNNEGYVMSGYESQNRHFGGQLLHDFVG* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun250g00045 597 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Phacun250g00045 597 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 464 - -
Phacun250g00045 597 SUPERFAMILY Homeodomain-like 384 449 IPR009057 -
Phacun250g00045 597 MobiDBLite consensus disorder prediction 471 490 - -
Phacun250g00045 597 Pfam Associated with HOX 216 338 IPR006563 -
Phacun250g00045 597 MobiDBLite consensus disorder prediction 252 275 - -
Phacun250g00045 597 MobiDBLite consensus disorder prediction 453 470 - -
Phacun250g00045 597 MobiDBLite consensus disorder prediction 453 497 - -
Phacun250g00045 597 CDD homeodomain 382 443 IPR001356 GO:0003677
Phacun250g00045 597 Gene3D - 385 447 - -
Phacun250g00045 597 FunFam BEL1-like homeodomain protein 9 385 447 - -
Phacun250g00045 597 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Phacun250g00045 597 SMART prehox3 211 339 IPR006563 -
Phacun250g00045 597 MobiDBLite consensus disorder prediction 354 375 - -
Phacun250g00045 597 SMART HOX_1 382 446 IPR001356 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun250g00045 147 597 Homeobox Transcription Factor Family AT5G02030 49.076 1.74e-117 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phacun250g00045 POX 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun250g00045 - - gmx:100805512 1006.13