Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phacun250g00034 | ATGGATGGCAAAGGAAGCCCTGCGGAAAGGGAAGAACTGAGCAAACAGAAGGGAAAAACAGAGACGGTGGCGTTTCGCAAGCTGTTCGCGTTTTCGGACTGCGCAGACATTGTGTTGATGGTGGTTGGAAGCGTTGGCGCCATCGGAAACGGTTTAGGGTTTCCTCTGATGACATTACTTTTCGGTGAAATAATTGACGTCTTCGGAGTCAACCAGAACAGCCCCGGCATAGTGGAAAAAGTCTCTCAGGTTTCTCTCAAATTTGTGTACTTGGCACTAGGATCTGGGGTGGCAGCTTTCCTTCAGGTGAGTTGCTGGATGGTGACTGGGGAAAGACAGGCTGCAAGAATAAGGGGACTGTATTTGAAAACAATTCTAAGACAAGACATTGCTTTCTTTGACAAGGAAACAAACACTGGTGAAGTCATAGAAAGAATATCAGGTGATACTGTTCTCATTCAAGATGCTATGGGAGAGAAGGTTGGGAAATTTGTGCAGTTGATAGCAACATTCATAGGGGGCTTTGCAATAGCATTTGCCAAAGGGTGGCTTCTTACAGTTGTGATGCTGTGCATTCTTCCACTCCTTGTTCTCTCAGGGGCTGCCATGGCCATCATCCAAGGCAGAATGGCTTCTAGAGGTCAAGCTGCCTATGCAAAAGCTGCACACCTGGTTCAGCAGACAATTGCCTCAATCAGAACAGTTGCATCCTTTACTGGGGAAAAACAAGCAGTGTCTGATTACAGAAAATTTCTTGTAGAAGCTTACGTAACTGGCGTTCATGAAGGTTCTGTTGCTGGAGTGGCCCTTGGCACAGTTATGCTTCTTGTTTTCAGTGGTTATGCTTTGGCAGTGTGGTTTGGTGCAAAGATGATAATGGAAAATGAAAAAAAATATAATGGGGGCACGGTGCTCAATGTGATTGCTTCTTTATTAACAGCTTCAATGTCTCTTGGGGAGGCATCCCCTATCATGAGTGCATTTGCTGCAGGTCAAGCTGCTGCTTACAAAATGTTTGAAGCAATTGCGAGGAAGCCTGAGATAGATGCTTATGACCCAAATGGAAAAATATTAGAGGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGTTTCAGTTATCCAACGAGGCCTGAGGAGTTGATACTCAATAGGTTCTCTCTTGATATACCTAGTGGTACAAGTGTTGCTCTTGTGGGACAAAGTGGATGTGGAAAATCCACGGTTATCAGTTTGATAGAGAGATTCTATGATCCTCAAGAAGGTGAAGTTGTTATTGATGGCATTAACCTGAAAGAGTTTCAGCTTAGTTGGATGAGGGGGAAAATTGGCCTTGTTAACCAGGAGCCAGTGTTGTTTGCATCAAGCATTATGGATAACATTGCATATGGAAAGGAGGGAGCCACAATTGAAGAGATAAGATCAGCATCTGCACTTGCAAATGCTACAAAATTCATTCATAAACTGCCACAGGGATTGAACACAATGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAGAAGCAGCGCATTGCCATAGCGAGAGCAATCCTAAAGGATCCAAGAATTCTACTTCTGGACGAAGCTACAAGTGCCCTTGATGCAGAGTCTGAAAGGACAGTGCAAGAGGCTCTTGACAGGGTCATGGTTAACCGAACTACTGTTGTTGTGGCACATCGGTTGAGCACAGTGAGGAATGCTGATACCATTGTTGTAATTCATAGAGGGAAGGTGGTTGAAAAAGGAACACACTCAGAACTAGTCAAGGATCTGGAGGGAGCTTACTCTAAATTGATACGTTTACAACAAGTAAACAAGGAATCAGAAGAAACTACAAGCTATGACAGCAAGAGTGAAGTTTCTATGGAATCCTCTACACAGTTAACCAAAAAGATATCAATTAGGAGATCTATTAGTAGGGGATCCTCTTTGGGGAGTAGTAGCCGCCACTCATTTTCTCTTTCCTCTGGTTTACCCACGCGTGCTAGTTTCCCTGATAATGAAGGTGATGACCCTTTACTCGAAAGACAAGCACAAGAGGTTTCACTCCTCCGGCTTGCTTCCCTCAACAAACCAGAGATTCCAGTTCTTCTGATTGGATGTCTGGCTGCCATAGCAAATGGTGTTATACTTCCCATATTTGGGGTGTTGATTTCCAGTGTGGTCAAAACATTTTATGAACCAGTTGATGAGATGAAAAAGGAATCCAAATTTTGGGCACTTATGTTCGTGGTTCTTGGTGTTGCATCATTGTTGGTGATTCCAGCTCGAGCATACTTTTATTCTGTGGCTGGATGCAAGTTGATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTGAACATGGAGGTTGGTTGGTTTGATGAGCCAAGCAATTCAAGTGGTGCCATTAGTGCAAGGCTCTCAGCCATTGCTGCTTCTGTGCGCGCCCTTGTTGGTGATGCACTGGGGCTGTTGGTCCAAAATTTAACATGTGCCTTGGCAGGTTTGATTATTGCTTTCATTGCATGCTGGCAGTTGGCTTTGATTATTCTTGTCTTGATTCCCCTTATTGGTGCAAATGGCTATGTTCAAACGAAATTCATGATGGGGTTCACCAAAGATGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCTAAAGATGCAGTTGAAAATATAAGAACAGTAGCTTCTTTCTGTGCTGAAGATAAGGTCATGGAATTGTATAGGAAGAAATGTGAAGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGTGGATTAGGATTTGGGGTTTCATTTTTCTTACTATTTTGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCGCTGGAGAAACATCATTCTCCGAAGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCAGCTATTGGAGTTTCCCAGTTTAGCACAATTTCTCCTGATTCTGGCAAAGCCAAATCGGCTGCGGCTGCCATATTTGGAATAATTGATAAGAAGTCAGAGATAGATCCAAGTGACGAGACTGGTACCACATTGGATATAGTTGAGGGAGAAATTAAGCTTCACCATGTGAATTTCAAGTATCCATCAAGGCCAAATGTACAGATTTTTCGAGACCTTAACTTGGTTATCCATTCTGGCAAGACAGTGGCCCTTGTTGGTGAAAGTGGAAGTGGAAAATCAACAGTGATTGCGTTGTTGCAGAGATTTTATGTTCCCAATGCAGGTGAAATCACACTTGATGGTGTACCAATTGGGGACTTACAACTGAAGTGGTTTAGGCAGCAAATGGGTTTTGTAAGCCAAGAGCCAGTATTGTTCAATGATACTATTCGTGGTAACATTGCTTATGGGAAGGGAGGTGAAGCAACTGAAGCAGAAATCATTGCAGCTGCAAAACTAGCTAATGCCCATGTCTTTATTAGTGCCTTACAACAGGGTTATGACACTGTAGTGGGAGAAAGGGGAACCCAATTATCTGGTGGGCAGAAGCAAAGGGTAGCCATTGCCCGTGCTTTGATCAAAAGTCCAAAGATATTGCTCTTAGACGAAGCCACAAGTGCATTAGACGCTGAGTCAGAGAGAGTTGTTCAGGATGCATTGGACAAAGTGATGGTGAATAGGAGCACTGTGGTTGTGGCACATCGTCTATCTGCAATAAAAAGTGCAGATTTGATTGGTGTTGTGAAAGGTGGAGTCATAGTGGAGGAGGGAAGCCACGAAACACTGGTTAGAGTGAAGGATGGGTTTTATGCTTTCTTAGTTCAACTTCACTCAAATGCTTCAAAAACTAGAGTTCTATGA | 3807 | 0.4339 | MDGKGSPAEREELSKQKGKTETVAFRKLFAFSDCADIVLMVVGSVGAIGNGLGFPLMTLLFGEIIDVFGVNQNSPGIVEKVSQVSLKFVYLALGSGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIERISGDTVLIQDAMGEKVGKFVQLIATFIGGFAIAFAKGWLLTVVMLCILPLLVLSGAAMAIIQGRMASRGQAAYAKAAHLVQQTIASIRTVASFTGEKQAVSDYRKFLVEAYVTGVHEGSVAGVALGTVMLLVFSGYALAVWFGAKMIMENEKKYNGGTVLNVIASLLTASMSLGEASPIMSAFAAGQAAAYKMFEAIARKPEIDAYDPNGKILEDIEGEIELRDVCFSYPTRPEELILNRFSLDIPSGTSVALVGQSGCGKSTVISLIERFYDPQEGEVVIDGINLKEFQLSWMRGKIGLVNQEPVLFASSIMDNIAYGKEGATIEEIRSASALANATKFIHKLPQGLNTMVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVVVAHRLSTVRNADTIVVIHRGKVVEKGTHSELVKDLEGAYSKLIRLQQVNKESEETTSYDSKSEVSMESSTQLTKKISIRRSISRGSSLGSSSRHSFSLSSGLPTRASFPDNEGDDPLLERQAQEVSLLRLASLNKPEIPVLLIGCLAAIANGVILPIFGVLISSVVKTFYEPVDEMKKESKFWALMFVVLGVASLLVIPARAYFYSVAGCKLIQRIRVICFEKVVNMEVGWFDEPSNSSGAISARLSAIAASVRALVGDALGLLVQNLTCALAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFMMGFTKDAKMMYEEASQVAKDAVENIRTVASFCAEDKVMELYRKKCEDPMKTGIWQGLISGLGFGVSFFLLFCVYATSFYAGARLVAAGETSFSEVFRVFFALTMAAIGVSQFSTISPDSGKAKSAAAAIFGIIDKKSEIDPSDETGTTLDIVEGEIKLHHVNFKYPSRPNVQIFRDLNLVIHSGKTVALVGESGSGKSTVIALLQRFYVPNAGEITLDGVPIGDLQLKWFRQQMGFVSQEPVLFNDTIRGNIAYGKGGEATEAEIIAAAKLANAHVFISALQQGYDTVVGERGTQLSGGQKQRVAIARALIKSPKILLLDEATSALDAESERVVQDALDKVMVNRSTVVVAHRLSAIKSADLIGVVKGGVIVEEGSHETLVRVKDGFYAFLVQLHSNASKTRVL* | 1269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phacun250g00034 | 1268 | FunFam | ABC transporter B family member 1 | 355 | 604 | - | - | |
| Phacun250g00034 | 1268 | MobiDBLite | consensus disorder prediction | 641 | 663 | - | - | |
| Phacun250g00034 | 1268 | ProSitePatterns | ABC transporters family signature. | 504 | 518 | IPR017871 | GO:0005524|GO:0016887 | |
| Phacun250g00034 | 1268 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 41 | 330 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Phacun250g00034 | 1268 | FunFam | ABC transporter B family member 1 | 1010 | 1260 | - | - | |
| Phacun250g00034 | 1268 | Pfam | ABC transporter | 383 | 532 | IPR003439 | GO:0005524 | |
| Phacun250g00034 | 1268 | FunFam | ABC transporter B family member 1 | 678 | 986 | - | - | |
| Phacun250g00034 | 1268 | SUPERFAMILY | ABC transporter transmembrane region | 26 | 349 | IPR036640 | GO:0005524|GO:0016020 | |
| Phacun250g00034 | 1268 | Pfam | ABC transporter | 1039 | 1188 | IPR003439 | GO:0005524 | |
| Phacun250g00034 | 1268 | SMART | AAA_5 | 1047 | 1241 | IPR003593 | GO:0016887 | |
| Phacun250g00034 | 1268 | SMART | AAA_5 | 392 | 578 | IPR003593 | GO:0016887 | |
| Phacun250g00034 | 1268 | Gene3D | ABC transporter type 1, transmembrane domain | 27 | 624 | IPR036640 | GO:0005524|GO:0016020 | |
| Phacun250g00034 | 1268 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1011 | 1256 | IPR027417 | - | |
| Phacun250g00034 | 1268 | Pfam | ABC transporter transmembrane region | 698 | 970 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Phacun250g00034 | 1268 | Pfam | ABC transporter transmembrane region | 43 | 316 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Phacun250g00034 | 1268 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 688 | 1003 | - | - | |
| Phacun250g00034 | 1268 | SUPERFAMILY | ABC transporter transmembrane region | 686 | 1005 | IPR036640 | GO:0005524|GO:0016020 | |
| Phacun250g00034 | 1268 | CDD | ABC_MTABC3_MDL1_MDL2 | 365 | 603 | - | - | |
| Phacun250g00034 | 1268 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 365 | 601 | IPR003439 | GO:0005524 | |
| Phacun250g00034 | 1268 | Gene3D | - | 355 | 604 | IPR027417 | - | |
| Phacun250g00034 | 1268 | Gene3D | - | 1010 | 1260 | IPR027417 | - | |
| Phacun250g00034 | 1268 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 699 | 985 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Phacun250g00034 | 1268 | Gene3D | ABC transporter type 1, transmembrane domain | 988 | 1264 | IPR036640 | GO:0005524|GO:0016020 | |
| Phacun250g00034 | 1268 | MobiDBLite | consensus disorder prediction | 641 | 671 | - | - | |
| Phacun250g00034 | 1268 | FunFam | ABC transporter B family member 9 | 27 | 361 | - | - | |
| Phacun250g00034 | 1268 | Gene3D | ABC transporter type 1, transmembrane domain | 678 | 987 | IPR036640 | GO:0005524|GO:0016020 | |
| Phacun250g00034 | 1268 | PANTHER | ABC TRANSPORTER B FAMILY | 9 | 753 | IPR039421 | - | |
| Phacun250g00034 | 1268 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1020 | 1257 | IPR003439 | GO:0005524 | |
| Phacun250g00034 | 1268 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 354 | 603 | IPR027417 | - | |
| Phacun250g00034 | 1268 | CDD | ABC_MTABC3_MDL1_MDL2 | 1020 | 1258 | - | - | |
| Phacun250g00034 | 1268 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 40 | 326 | - | - | |
| Phacun250g00034 | 1268 | ProSitePatterns | ABC transporters family signature. | 1160 | 1174 | IPR017871 | GO:0005524|GO:0016887 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phacun250g00034 | 2 | 1259 | Calmodulin-binding Proteins | AT2G36910 | 43.205 | 0.0 | 1009 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phacun250g00034 | K05658 | - | gmx:100800034 | 1857.8 |