Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun238g00082 ATGAATCGAGGGGCTCCCATTGCTTGCAGGACGCGTAACAAGAAGAGAAAGTTGTTTGAGAATGCTTTACTAATGAGTCGGAAGAGGAAGAAGGCGCGGGAACATGAAGCTATTTTCTCCAATGGTGTAGGTGCATGTGTGAAAGTTGAACCTGGGTCCGTCGCTTCGTTGACATCTTCTGCTGCTCTTGCAATGAACTGTGAAATAGTACCGGAACGTGGTTCTCAGCGTCTGGGAGAGCATATGGGCGACCCTATTGTAATCAGTGATGGTGATGATAGCAGTGAGGCTGAAGAGGGATTGAGGGATCTTGAGAGCGATATATTTTGGGTTAAAGTGGAAAGCAAGAGTGAGGAGGATAAAGGGTCTTTAGTGTTGGGTGATAAAGTTGTGAACTTTGGCGATGATAACTATGGCCGTGAATATGAAAATCCGGTTGCATTGTCGACTGATGAAGATGAGGATGATCATGGTGATTTGCTTGTGGCTTCAAGTGAGAGTGAGGATGATGAGACGAGCGATGAAGATTTTCAGGTTACCAATGATGGCGATGATGATGGGTTTGAGACTGAAGACTCAACCAGTGACGACAGTGATGGCGATGATGGTTGTTGTGGTGGTGGTGATGTGAGGGGGGTTTACAGGAAGACGGTGAAGGGTATGGTGAGAAAGATGGAGAGTGATACTGAAAGCAGTGGAATTTGCAAAAGGAAAGGTGAAAGGAAAAGTAATGATCAGGTAGATGAGGAGGAGCAATGGATTGGCGCTGATTGTACTAGTGCGACCTCTAGTAAATCTGAGATTTACAAGAAGGAAGGAAAACATGCAACACATAAACATGAAGCAAAGAGAGTGCAAAATGTCATTGCTGATTTTGAAGTCTGTGGTGTTCACGGGGGAAATTCAGGTTGTTCTCTGCCTTCTGAAGCCCAGGAGCATATGAAGAAAAGTGATAGAGGTGATCAAAGTGCGACATCGCAGCAGCAGATAGGAGATTCAACTGTGGTCGAGAAGAGCGGGAGCAAAAAACATATCAATGCCTTTGACCGGGTGAATACTGATGATATTGAAAGAAAAGAGAATCAACACAACAAAGGAACAGGTCTGAGGAGTGTTTCTTTTAGTCCAAAAATCCAAGAGAAGATAGGAGATTCTGCTAAAATTGTAATGGAAAAGGACAAGGAAGGGAAACATAAATATTGGTTTAATAGCAATAACCGTGAGAAGGTCAGGGTGGTGGATGAGGAAACTGGTGACAAAGAGTTGCATGAAGTCCTACGGATGCCATCTACATTGAAAAACAAATGTTATAAATTTTTTACTGAATGTTTTATGGGCAAGAATGATTCTGTTAAGGATGATTCAAATAAGTTGGATGAAAAGGATGATGATGTTGCTGAGGGTCAGACTAAGCCATTAGTTTCTAGGCAGCCAATCCCTTTTCATTGTGGCTTTATGAACGAAGAAGAACCTATAGAAAAGTCAGAGCAAGAGAAGGAGTTAGATGTGTTGTGGGGTGAAATGGATATGTTGCTTCGAGTTGAAGAAATTGGGACCCAGGTTAATAATATAGGGACAAATGAAGCAATAGAAAACGAAGAAAGTCCAGCCTCGAAGTGCAAGCATGACACTATTTTTAACGAGCAGATTGGGATATATTGTAGATGGTGTGGTTGGATCGAGACTGAAATCAAATATATCACTCCACCATTTGTGGATTCTGAAAGATATGGTGGTAGAAGGGTGGCATCTGATGATGGAGGTAACATCTCGAAATTGGATAGGGCTCTGTTGAATGAGTCTGATGATGACTTGGAGGAAATTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTAACATTAAACAAAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAACTTGGGAGGAACTATTGACCTCGCCAAATTGAAGAGTGTTGACCCATGCAATGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACAGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAATTGTTTCCAAAGTGTCTACCTGTTATCATTGCTCCTTCCAACATATTGCTTACTTGGGAAGACGAGCTGAGAAAGTGGAACTTAGGAATTCCATTCCATAACTTGAACAGTGCTGAATTATCAGGAAAAGAACAAGTCATCAATGAAGTTGATTGGTCTGGCAATCAGAGGCAGAATAAGGATGCCATACGGATGGTGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGCTAGCAGGGGCCACGTCTGGGGGTGATGGGGAAAAAGAGAAGAATAATGGAAAGATCGAGAAAAAGAAACATGCAAGGTCAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCAGGTTTGCTAGTACTTGACGAAGGACACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAATTCTTCTCTCAGGGACTCCTTTTCAGAACAACTTTTTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATCCCACAAGAGCTCAAGAAGTTTTGCCAAAGTAGACTTATGCACCGAAGGAAAGCATCAAAAGACATGAGTTGGGAACCTGTTTCTTCTCGAAATCCTGCTTCTGAAAAAATAAACCAGCTAAATTTGCTGATGAACCCCTTTGTTCATGTTCACGAAGGTAGCATTCTTCAGAACAACCTTCCTGGGTTGAGAGAATGTGTGTTGGTTCTGAAGCCAGACACTTTTCAGCAAGAAACTCTAGAGAGCATTGAATACTCTCAAAACGTTCTAAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAGCTGCTCTTTGTCAAAAAAAGAAGAATCCATTATTGACAAGGGTAAGTTGGAAAAAGTTAGATTGAACCCTTATGCAGGGGTGAAAACCAAATTTCTGATCGAGTTTATAAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACTTTAAACTTAATCAAGGACCAGCTCGAGTCAGCCTTCAATTGGACTTTGGGGATGGAAGTGTTATATATGTATGGCAAGCTTGACCAAAAGCAAAAACAGTCCCTCATTTATAGTTTCAATGAAGCAAATAGCCAAGCAAAGGTGTTACTTGCATCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGAGCTTCAAGGGTCGTGATTCTTGATGTTGTTTGGAATCCCTCAGTCGAAAGGCAAGCTATTTGCCGAGCATATAGACTAGGACAAAAGAAGGTTGTTTTCACTTATCATCTACTTGCCCAGGGCACCCCTGAATGCACCAAATACTGCAAACAAGCAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCAAATAGAAATGCTGAAAGCGATAAGGTGAAGAGTAGGGGAGTAATGCTTGAGGATTTTGAAGATAGAGTTCTTGATCTCCTGGTTCATCATGAAAAACTCAAGGATATGATTGGTGAATGTATAATCCAACCTAAGAAGAGAGATCTGGAGATTTTGGGCCCCTGA 3660 0.4148 MNRGAPIACRTRNKKRKLFENALLMSRKRKKAREHEAIFSNGVGACVKVEPGSVASLTSSAALAMNCEIVPERGSQRLGEHMGDPIVISDGDDSSEAEEGLRDLESDIFWVKVESKSEEDKGSLVLGDKVVNFGDDNYGREYENPVALSTDEDEDDHGDLLVASSESEDDETSDEDFQVTNDGDDDGFETEDSTSDDSDGDDGCCGGGDVRGVYRKTVKGMVRKMESDTESSGICKRKGERKSNDQVDEEEQWIGADCTSATSSKSEIYKKEGKHATHKHEAKRVQNVIADFEVCGVHGGNSGCSLPSEAQEHMKKSDRGDQSATSQQQIGDSTVVEKSGSKKHINAFDRVNTDDIERKENQHNKGTGLRSVSFSPKIQEKIGDSAKIVMEKDKEGKHKYWFNSNNREKVRVVDEETGDKELHEVLRMPSTLKNKCYKFFTECFMGKNDSVKDDSNKLDEKDDDVAEGQTKPLVSRQPIPFHCGFMNEEEPIEKSEQEKELDVLWGEMDMLLRVEEIGTQVNNIGTNEAIENEESPASKCKHDTIFNEQIGIYCRWCGWIETEIKYITPPFVDSERYGGRRVASDDGGNISKLDRALLNESDDDLEEIWSHNEGTVWDLIPNIKQSLYPHQQEGFEFIWTNLGGTIDLAKLKSVDPCNEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPSNILLTWEDELRKWNLGIPFHNLNSAELSGKEQVINEVDWSGNQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATSGGDGEKEKNNGKIEKKKHARSREYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLMHRRKASKDMSWEPVSSRNPASEKINQLNLLMNPFVHVHEGSILQNNLPGLRECVLVLKPDTFQQETLESIEYSQNVLNFEHKLALVSVHPSLFLSCSLSKKEESIIDKGKLEKVRLNPYAGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLNLIKDQLESAFNWTLGMEVLYMYGKLDQKQKQSLIYSFNEANSQAKVLLASIKASSEGINLIGASRVVILDVVWNPSVERQAICRAYRLGQKKVVFTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESDKVKSRGVMLEDFEDRVLDLLVHHEKLKDMIGECIIQPKKRDLEILGP* 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 783 798 - -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 777 798 - -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 321 336 - -
Phacun238g00082 1219 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 221 1213 IPR044567 GO:0080188
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 78 100 - -
Phacun238g00082 1219 Pfam Helicase conserved C-terminal domain 1014 1129 IPR001650 -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 164 207 - -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 451 469 - -
Phacun238g00082 1219 SMART ultradead3 623 878 IPR014001 -
Phacun238g00082 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 892 IPR027417 -
Phacun238g00082 1219 Pfam SNF2-related domain 649 957 IPR000330 GO:0005524|GO:0140658
Phacun238g00082 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1017 1185 IPR001650 -
Phacun238g00082 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 815 1175 IPR027417 -
Phacun238g00082 1219 CDD SF2_C_SNF 986 1140 - -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 306 345 - -
Phacun238g00082 1219 SMART helicmild6 1044 1129 IPR001650 -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 451 471 - -
Phacun238g00082 1219 Gene3D - 599 923 IPR038718 -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 223 251 - -
Phacun238g00082 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 653 870 IPR014001 -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 223 249 - -
Phacun238g00082 1219 MobiDBLite consensus disorder prediction 164 203 - -
Phacun238g00082 1219 Gene3D - 936 1206 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun238g00082 1027 1159 RAD5 or RAD16-like Gene Family AT5G43530 40.602 2.94e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phacun238g00082 SNF2_N 1.5e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun238g00082 K10875 - gmx:100812737 1521.91