Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun238g00081 ATGTATCAGGGTGTTCCGGTTGCTTGCAGGACTCGAAGCAATAAGCGTGTGGTCGTCGGGAGTGGTTTGATAATGGGTCGGAAAAGGAGGATAAAGGTGGATGAACAGGACGATGAAGTGATTTACTTGGGAGAAAATTTGGAAGGCAAAACGGGTGCAAGAGGGAAATTTGCATCTGGGTCTGGGGCTTCATGTTCATCACCAGATGCTATGGAGAAGGGTTACATATTTTTGGGAGAGGGTGAGGATGATCCTATAACGGTGGTTGACCTCGAAGACGGTGATGAGGCTGAAGTGGGGTTTGGGTGTTGCGAAACGAAGGGTTTTCAGGTTAAGGAGGAAGAGAGGAGTGAGGAGGGTGAAGGATGTTATGTAGCAGCTGATAAAGTTGAGAGCTTTGGTGGTGATGAATACGGTGCTGTAGCTGAAAAGCCGGTTGTTTTGTTGCCTGATTCAGATAGTAGTTTTGACAATGGATATGATTCATTTCGGTCTTCGACGGAGAGTGAGGATTTTGAGACGAGTGATGATGATTTTATGGTTGAAGAGGATGATGATGGAGTTGTGAGTGAATACTCGAGCAGTGCGGAGAGTGATGATTCTTCTGAAGATGATAAGAGGGGGGGATACAAGATGGTTAAGGAGAGGGTAAGAAAGGAGGTGAGTGAATCTAAGAGCAGTAGAGTTTGGAGAATGAAAGGTAAAAGGAAGAGTAGGCATGTAGCGGAGGAGAAATGGAATGGTCCTGATTGTGCTAGCGTGGCATCTAGTAAATCAGAGATTTATGAGGAGGAAAGAAAAAAGGCAGGAGAGAAACAAGAAGCAAACAGAGTAGAGAATGTCAATAATGCTGATCCTGAAGTCTTTAGTGTTCAGTGGCAAACTTCAGGTCTCTCTGTGCCTTCTGAAGATGAGACACTAGAGGATAAGGAGAAAGAAGGTAGGGGTCTTCAAAGGGTGTTCATTAAAAAAGAGACAGGATATTCAACTGTGATCAAGATGAGTGAGAAGAATAATAAGGTCAAGGCCAATGTTAAAGAAACTGGACATAAAGATGAGCTCCATGAAATCCTGAGGATGTCACCGACAACAAAGAACCAATGTTTTGAATTCTTCACTGAATGCTTTAGGAGGGGCAAGCGTGATTCTGCTAAAGATGTTTCAATAGATTTTGGAGAAAAGGTTGATGTTGATCAGGGTCAGACTCGGCCATTAGGTCCTAAGGAGACAATCCCTTTAAACTGCAACTCTATGATGAAAGAAAAACCTATTGAAAAATCAGAGTCCGAGAAAGAGTTGGATATGTTGTGGGAAGAAATGGAAATGTTGCTTCAAGCTGAAAAAATTGGATTCCAGGTTGATAATACAAAGACAAATGAAGGAAGAGAAAACGAAAAAAATCCAGCCTCACAGTGCAAACATGACACTATTTTTGATGAGCAGATTGGTATATACTGTAGATGGTGTGGTTGGATTGAAACTGAAATTAAATATATAACACCAGAATTTATAGATTCTGAGAGATGTGGAAGAAGGGTGTTGTCTGATGGAGGGAGGACCACGGGATTTGATGGGGTTCTGTTCACAGAAACTGGTAAAGACTCAGAAGCAGTCAGGTCTCACAATCATGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGGTTTGAGTTTATTTGGGCAAATTTGGCAGGAACCACTGAGCTTTCCAAGTTGAAGAGGGTTGATGCTGAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTTTGCAGACATATTTGCAAGTGTTTCCTAAGTGTTTGCCCGTTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAAGAAGTGGAACATAGGAATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAAGAACATGCCATTAGGGAAGTTGATTGGTCATTCAACCAACAGCAGAATAAGGACGTGATAAGAATGCTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTATATGAGAAACTAACCGGGGGAAAGTCTGAAGGACACGCGGAGAAAGAGAAGAAAAATAGAAAGATTGGAAAAGAGAAGAAACGTGCAAGAAGATCTAGGGAGTATGTTGAAACTGAATTGGGAAATGTTCTGCGAGACTATCCTGGTTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGTAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCGTGAACTCTACAATATTTTATGCTTAATGAAACCATCTTTTCCTGAAAGCATACCGCAAGAACTCAAAAAGTTTTTGAAAAATAAACTTATACAGGAAACGAAAGCTTCAAAAGATGTGAGTTGGGAACCAATTTCTGTAGAAAATCCAGCCAGAGAAAAAATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTGAGAAGCACCTTCCTGGTTTAAAAGATTGTGTGCTGATTTTGAAGCCAGAATGCTTGCAGCAAACAATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAATTTTGAGCACAAGTTGGCCTTGGTGTCTGTCCATCCCTCCCTTTTTCTCAACTGCACTCTGTCAAAGAAAGAAAAATCTGTTGTTGACTCAGAGCAGTTGAAAAGGATTAGATCGGACCCTTATGAAGGGGTCAAAACCAAATTTCTGATTGAGTTTGTTAGACTGTGTGATGCAGTTAATGAGAAAGTCCTAGTGTTCAGCCAGTTCATTGATACCTTGTGCTTAATCAAGGACCAGCTGGAGTCAGCCTTCGATTGGAGTGTGGGAACTGAAGTGTTGTATATGCATGGCAAGCTTGATCAAAAGCAAAAGCAAATTCTGATTCATAGTTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTGTGAAGGCATTAACTTGGTTGGAGCTTCAAGGGTGGTGCTTGTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCGTATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAGTATTGTAAACAGTCAGAGAAGGACCGGTTATCTGAACTGGTATTCTCAAGTAGAAATGTTGAAAATGATGACGACGAGCTTAAAAATGTTGGAGTAGAGCTTGTAGATAAAGTTCTTGATATCATGGTTCAGCACAAAAATCTCAAGGACATATTTGGTGAATGTCTGGTCTAA 3417 0.4159 MYQGVPVACRTRSNKRVVVGSGLIMGRKRRIKVDEQDDEVIYLGENLEGKTGARGKFASGSGASCSSPDAMEKGYIFLGEGEDDPITVVDLEDGDEAEVGFGCCETKGFQVKEEERSEEGEGCYVAADKVESFGGDEYGAVAEKPVVLLPDSDSSFDNGYDSFRSSTESEDFETSDDDFMVEEDDDGVVSEYSSSAESDDSSEDDKRGGYKMVKERVRKEVSESKSSRVWRMKGKRKSRHVAEEKWNGPDCASVASSKSEIYEEERKKAGEKQEANRVENVNNADPEVFSVQWQTSGLSVPSEDETLEDKEKEGRGLQRVFIKKETGYSTVIKMSEKNNKVKANVKETGHKDELHEILRMSPTTKNQCFEFFTECFRRGKRDSAKDVSIDFGEKVDVDQGQTRPLGPKETIPLNCNSMMKEKPIEKSESEKELDMLWEEMEMLLQAEKIGFQVDNTKTNEGRENEKNPASQCKHDTIFDEQIGIYCRWCGWIETEIKYITPEFIDSERCGRRVLSDGGRTTGFDGVLFTETGKDSEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTTELSKLKRVDAESEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPVIIAPANILLTWEDELKKWNIGIPFHNLNNAELSGKEHAIREVDWSFNQQQNKDVIRMLKLCSWYKEKSILLISYNLYEKLTGGKSEGHAEKEKKNRKIGKEKKRARRSREYVETELGNVLRDYPGLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFRELYNILCLMKPSFPESIPQELKKFLKNKLIQETKASKDVSWEPISVENPAREKINQLKLLMNPFVHVHKGSILEKHLPGLKDCVLILKPECLQQTILESIDCSQNALNFEHKLALVSVHPSLFLNCTLSKKEKSVVDSEQLKRIRSDPYEGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFDWSVGTEVLYMHGKLDQKQKQILIHSFNDANSQAKVLLASIKASCEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYCKQSEKDRLSELVFSSRNVENDDDELKNVGVELVDKVLDIMVQHKNLKDIFGECLV* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun238g00081 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 822 IPR027417 -
Phacun238g00081 1138 CDD SF2_C_SNF 943 1072 - -
Phacun238g00081 1138 SMART ultradead3 553 810 IPR014001 -
Phacun238g00081 1138 SMART helicmild6 976 1061 IPR001650 -
Phacun238g00081 1138 MobiDBLite consensus disorder prediction 708 728 - -
Phacun238g00081 1138 MobiDBLite consensus disorder prediction 199 229 - -
Phacun238g00081 1138 Gene3D - 530 854 IPR038718 -
Phacun238g00081 1138 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 126 1136 IPR044567 GO:0080188
Phacun238g00081 1138 Pfam Helicase conserved C-terminal domain 953 1061 IPR001650 -
Phacun238g00081 1138 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 949 1112 IPR001650 -
Phacun238g00081 1138 Pfam SNF2-related domain 571 886 IPR000330 GO:0005524|GO:0140658
Phacun238g00081 1138 MobiDBLite consensus disorder prediction 171 190 - -
Phacun238g00081 1138 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 583 802 IPR014001 -
Phacun238g00081 1138 MobiDBLite consensus disorder prediction 159 244 - -
Phacun238g00081 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 1108 IPR027417 -
Phacun238g00081 1138 Gene3D - 872 1132 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun238g00081 959 1091 RAD5 or RAD16-like Gene Family AT5G43530 39.850 2.03e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phacun238g00081 SNF2_N 2.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun238g00081 K10875 - gmx:100806733 1298.11