LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phacun238g00080	ATGGGTCGGAAAAGGAGGATAAAGGTGGATGAACAGGACGATGAAGTGATTTACTTGGGAGAAAATTTGGAAGGCAAAACGGGTGCAAGAGGGAAATTTGCATCTGGGTCTGGGGCTTCATGTTCATCACCAGATGCTATGGAGAAGGGTTACATATTTTTGGGAGAGGGTGAGGATGATCCTATAACGGTGGTTGACCTCGAAGACGGTGATGAGGCTGAAGTGGGGTTTGGGTGTTGCGAAACGAAGGGTTTTCAGGTTAAGGAGGAAGAGAGGAGTGAGGAGGGTGAAGGATGTTATGTAGCAGCTGATAAAGTTGAGAGCTTTGGTGGTGATGAATACGGTGCTGTAGCTGAAAAGCCGGTTGTTTTGTTGCCTGATTCAGATAGTAGTTTTGACAATGGATATGATTCATTTCGGTCTTCGACGGAGAGTGAGGATTTTGAGACGAGTGATGATGATTTTATGGTTGAAGAGGATGATGATGGAGTTGTGAGTGAATACTCGAGCAGTGCGGAGAGTGATGATTCTTCTGAAGATGATAAGAGGGGGGGATACAAGATGGTTAAGGAGAGGGTAAGAAAGGAGGTGAGTGAATCTAAGAGCAGTAGAGTTTGGAGAATGAAAGGTAAAAGGAAGAGTAGGCATGTAGCGGAGGAGAAATGGAATGGTCCTGATTGTGCTAGCGTGGCATCTAGTAAATCAGAGATTTATGAGGAGGAAAGAAAAAAGGCAGGAGAGAAACAAGAAGCAAACAGAGTAGAGAATGTCAATAATGCTGATCCTGAAGTCTTTAGTGTTCAGTGGCAAACTTCAGGTCTCTCTGTGCCTTCTGAAGATGAGACACTAGAGGATAAGGAGAAAGAAGGTAGGGGTCTTCAAAGGGTGTTCATTAAAAAAGAGACAGGATATTCAACTGTGATCAAGATGAGTGAGAAGAATAATAAGGTCAAGGCCAATGTTAAAGAAACTGGACATAAAGATGAGCTCCATGAAATCCTGAGGATGTCACCGACAACAAAGAACCAATGTTTTGAATTCTTCACTGAATGCTTTAGGAGGGGCAAGCGTGATTCTGCTAAAGATGTTTCAATAGATTTTGGAGAAAAGGTTGATGTTGATCAGGGTCAGACTCGGCCATTAGGTCCTAAGGAGACAATCCCTTTAAACTGCAACTCTATGATGAAAGAAAAACCTATTGAAAAATCAGAGTCCGAGAAAGAGTTGGATATGTTGTGGGAAGAAATGGAAATGTTGCTTCAAGCTGAAAAAATTGGATTCCAGGTTGATAATACAAAGACAAATGAAGGAAGAGAAAACGAAAAAAATCCAGCCTCACAGTGCAAACATGACACTATTTTTGATGAGCAGATTGGTATATACTGTAGATGGTGTGGTTGGATTGAAACTGAAATTAAATATATAACACCAGAATTTATAGATTCTGAGAGATGTGGAAGAAGGGTGTTGTCTGATGGAGGGAGGACCACGGGATTTGATGGGGTTCTGTTCACAGAAACTGGTAAAGACTCAGAAGCAGTCAGGTCTCACAATCATGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGGTTTGAGTTTATTTGGGCAAATTTGGCAGGAACCACTGAGCTTTCCAAGTTGAAGAGGGTTGATGCTGAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTTTGCAGACATATTTGCAAGTGTTTCCTAAGTGTTTGCCCGTTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAAGAAGTGGAACATAGGAATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAAGAACATGCCATTAGGGAAGTTGATTGGTCATTCAACCAACAGCAGAATAAGGACGTGATAAGAATGCTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTATATGAGAAACTAACCGGGGGAAAGTCTGAAGGACACGCGGAGAAAGAGAAGAAAAATAGAAAGATTGGAAAAGAGAAGAAACGTGCAAGAAGATCTAGGGAGTATGTTGAAACTGAATTGGGAAATGTTCTGCGAGACTATCCTGGTTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGTAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCGTGAACTCTACAATATTTTATGCTTAATGAAACCATCTTTTCCTGAAAGCATACCGCAAGAACTCAAAAAGTTTTTGAAAAATAAACTTATACAGGAAACGAAAGCTTCAAAAGATGTGAGTTGGGAACCAATTTCTGTAGAAAATCCAGCCAGAGAAAAAATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTGAGAAGCACCTTCCTGGTTTAAAAGATTGTGTGCTGATTTTGAAGCCAGAATGCTTGCAGCAAACAATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAATTTTGAGCACAAGTTGGCCTTGGTGTCTGTCCATCCCTCCCTTTTTCTCAACTGCACTCTGTCAAAGAAAGAAAAATCTGTTGTTGACTCAGAGCAGTTGAAAAGGATTAGATCGGACCCTTATGAAGGGGTCAAAACCAAATTTCTGATTGAGTTTGTTAGACTGTGTGATGCAGTTAATGAGAAAGTCCTAGTGTTCAGCCAGTTCATTGATACCTTGTGCTTAATCAAGGACCAGCTGGAGTCAGCCTTCGATTGGAGTGTGGGAACTGAAGTGTTGTATATGCATGGCAAGCTTGATCAAAAGCAAAAGCAAATTCTGATTCATAGTTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTGTGAAGGCATTAACTTGGTTGGAGCTTCAAGGGTGGTGCTTGTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCGTATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAGTATTGTAAACAGTCAGAGAAGGACCGGTTATCTGAACTGGTATTCTCAAGTAGAAATGTTGAAAATGATGACGACGAGCTTAAAAATGTTGGAGTAGAGCTTGTAGATAAAGTTCTTGATATCATGGTTCAGCACAAAAATCTCAAGGACATATTTGGTGAATGTCTGGTCTAA	3345	0.4138	MGRKRRIKVDEQDDEVIYLGENLEGKTGARGKFASGSGASCSSPDAMEKGYIFLGEGEDDPITVVDLEDGDEAEVGFGCCETKGFQVKEEERSEEGEGCYVAADKVESFGGDEYGAVAEKPVVLLPDSDSSFDNGYDSFRSSTESEDFETSDDDFMVEEDDDGVVSEYSSSAESDDSSEDDKRGGYKMVKERVRKEVSESKSSRVWRMKGKRKSRHVAEEKWNGPDCASVASSKSEIYEEERKKAGEKQEANRVENVNNADPEVFSVQWQTSGLSVPSEDETLEDKEKEGRGLQRVFIKKETGYSTVIKMSEKNNKVKANVKETGHKDELHEILRMSPTTKNQCFEFFTECFRRGKRDSAKDVSIDFGEKVDVDQGQTRPLGPKETIPLNCNSMMKEKPIEKSESEKELDMLWEEMEMLLQAEKIGFQVDNTKTNEGRENEKNPASQCKHDTIFDEQIGIYCRWCGWIETEIKYITPEFIDSERCGRRVLSDGGRTTGFDGVLFTETGKDSEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTTELSKLKRVDAESEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPVIIAPANILLTWEDELKKWNIGIPFHNLNNAELSGKEHAIREVDWSFNQQQNKDVIRMLKLCSWYKEKSILLISYNLYEKLTGGKSEGHAEKEKKNRKIGKEKKRARRSREYVETELGNVLRDYPGLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFRELYNILCLMKPSFPESIPQELKKFLKNKLIQETKASKDVSWEPISVENPAREKINQLKLLMNPFVHVHKGSILEKHLPGLKDCVLILKPECLQQTILESIDCSQNALNFEHKLALVSVHPSLFLNCTLSKKEKSVVDSEQLKRIRSDPYEGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFDWSVGTEVLYMHGKLDQKQKQILIHSFNDANSQAKVLLASIKASCEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYCKQSEKDRLSELVFSSRNVENDDDELKNVGVELVDKVLDIMVQHKNLKDIFGECLV*	1115

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phacun238g00080	1114	CDD	SF2_C_SNF	919	1048	-	-
	Phacun238g00080	1114	SMART	ultradead3	529	786	IPR014001	-
	Phacun238g00080	1114	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	925	1088	IPR001650	-
	Phacun238g00080	1114	SMART	helicmild6	952	1037	IPR001650	-
	Phacun238g00080	1114	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	523	798	IPR027417	-
	Phacun238g00080	1114	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	559	778	IPR014001	-
	Phacun238g00080	1114	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	102	1112	IPR044567	GO:0080188
	Phacun238g00080	1114	Pfam	Helicase conserved C-terminal domain	929	1037	IPR001650	-
	Phacun238g00080	1114	MobiDBLite	consensus disorder prediction	684	704	-	-
	Phacun238g00080	1114	MobiDBLite	consensus disorder prediction	175	205	-	-
	Phacun238g00080	1114	Gene3D	-	505	827	IPR038718	-
	Phacun238g00080	1114	Pfam	SNF2-related domain	547	862	IPR000330	GO:0005524\|GO:0140658
	Phacun238g00080	1114	MobiDBLite	consensus disorder prediction	147	166	-	-
	Phacun238g00080	1114	MobiDBLite	consensus disorder prediction	235	251	-	-
	Phacun238g00080	1114	Gene3D	-	848	1108	IPR027417	-
	Phacun238g00080	1114	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	723	1084	IPR027417	-
	Phacun238g00080	1114	MobiDBLite	consensus disorder prediction	126	262	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phacun238g00080	935	1067	RAD5 or RAD16-like Gene Family	AT5G43530	39.850	1.80e-17	86.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Phacun238g00080		SNF2_N	2.2e-19	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phacun238g00080	K10875		-	gmx:100812737	1292.33