Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00058 ATGAGAGGACACTCCATCGACTATCATCCTACACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCATGACAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGACTTTCTTCAAGATGATGATGTTCCTTGGTTGGATGCCCATGATAGTGATATACACTTGGACATTGATGACATGTCATATGAGGAACTTCTTGAATTAGGTGAACGAATTGGCAACGTAGGCACAGGTTTGTTGGATGAATCTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAGGTACCTTTTGAGGAACAGGAAAATAATCTTTGCATAATATGTCAGTATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGCACATGGATATCACGTAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 492 0.3943 MRGHSIDYHPTLTLPTNPSSTSSVRMTTPPHWRNLPPQDFLQDDDVPWLDAHDSDIHLDIDDMSYEELLELGERIGNVGTGLLDESIARQMKTKTYLLPNNSGEVPFEEQENNLCIICQYEYKNKQEIGILQCAHGYHVDCIRTWLHEKNVCPLCKSEALTLG* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00058 163 Pfam RING-H2 zinc finger domain 111 156 IPR024766 GO:0008270
Phacun1g00058 163 MobiDBLite consensus disorder prediction 10 28 - -
Phacun1g00058 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 160 IPR045191 GO:0061630
Phacun1g00058 163 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Phacun1g00058 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 161 IPR013083 -
Phacun1g00058 163 MobiDBLite consensus disorder prediction 1 28 - -
Phacun1g00058 163 SMART ring_2 115 155 IPR001841 -
Phacun1g00058 163 SUPERFAMILY RING/U-box 107 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00058 34 160 C3H Transcription Factor Family AT2G15530 43.609 2.00e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00058 K19041 - pvu:PHAVU_011G149000g 302.753