Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00057 ATGAGAGGACCATCCATTGACTTTCATCCTACAGTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCATGACAACTCCTCCACATTGGAGGAATCTTCCTCCTCAAACCTTTCTTCAAGATGATGATGTTCCTTGGTTGGATGCCCATGATAGTGATATGCACTTGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACAGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCGAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAGGTAGCTTCTGAGGAACAAGAAAATAATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGAAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTTTCCCTTATGCAAATGA 471 0.3928 MRGPSIDFHPTVTLPTNPSSTSSVRMTTPPHWRNLPPQTFLQDDDVPWLDAHDSDMHLDIDDMSYEELLELGEQIGNVGTGLLDEIIARRMKTKTYLLPNNSGEVASEEQENNLCIICQDEYKNKQEIEILQCGHGYHADCIRTWLHEKNVFPLCK* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00057 156 MobiDBLite consensus disorder prediction 1 37 - -
Phacun1g00057 156 Pfam RING-H2 zinc finger domain 110 156 IPR024766 GO:0008270
Phacun1g00057 156 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Phacun1g00057 156 MobiDBLite consensus disorder prediction 10 35 - -
Phacun1g00057 156 SUPERFAMILY RING/U-box 114 155 - -
Phacun1g00057 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 156 IPR013083 -
Phacun1g00057 156 SMART ring_2 115 155 IPR001841 -
Phacun1g00057 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 18 156 IPR045191 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00057 50 156 C3H Transcription Factor Family AT2G15530 45.946 8.77e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00057 K19041 - pvu:PHAVU_011G149000g 300.056