Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00056 ATGAGAGGACACTCCATCGACTTTTATCCACCACTTACACTTCCAACAAATCCTTCAAGCACATTTTTCCATCCGCAGTATGAAGCACAGCCTGCACAAGAGATGAGAGGACACTCAATTGACTTTCATCCTATACTTACACTTCCAACAAATCCTTCTAGCACTTCTTCAGTGCGCATGACAACTCCTCCACAATGGAGGAATCTTCCTCCTCAACCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGATGCCCATGATAGTGATATGCCCTTGGACATTGATGACATGTCATATGAGCTTCTTGAATTAGGTGAACGGATTGGTAATGTAGGCAGAGGTTTGTTGGATGAAGTTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCCGGAGAGGTAGCTTATGAGGAACAAGAAAATAATCTTTGCATAATATGTCAGGATGATTATCAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCATGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAGTCAGAAGCATTGACTCTTGGATAG 591 0.4044 MRGHSIDFYPPLTLPTNPSSTFFHPQYEAQPAQEMRGHSIDFHPILTLPTNPSSTSSVRMTTPPQWRNLPPQPFLQDDDVPWLDAHDSDMPLDIDDMSYELLELGERIGNVGRGLLDEVIARQMKTKTYLLPNNSGEVAYEEQENNLCIICQDDYQNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00056 196 MobiDBLite consensus disorder prediction 47 73 - -
Phacun1g00056 196 CDD RING-H2_RNF24-like 147 192 - -
Phacun1g00056 196 SMART ring_2 148 188 IPR001841 -
Phacun1g00056 196 Pfam Ring finger domain 147 189 IPR001841 -
Phacun1g00056 196 SUPERFAMILY RING/U-box 141 192 - -
Phacun1g00056 196 MobiDBLite consensus disorder prediction 47 65 - -
Phacun1g00056 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 193 IPR013083 -
Phacun1g00056 196 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Phacun1g00056 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 193 IPR045191 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00056 84 193 C3H Transcription Factor Family AT2G15530 47.368 9.79e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00056 K19041 - pvu:PHAVU_011G149000g 350.517