Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00055 ATGATAACTGTCATCGGACTCAGGGATATGGATGAAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAGTATAGATTCTCATTACTTCCAAGATGCTTATGACAATGAGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCCATTCATATGGGTTTTCCTATTTCATCTACTTCAACTCCTTCATCAGAGATTGCAACAAATGATCCCCAAAGATATCATGATATAGCAAGAAGCAGAAGCAGAAGCGACTACAGATTTCCCCATCCACAGTATCAAGCACAACTTGCACAAGAGATGAGAGGACACTCCATTGACTTTCATCCACCACTTACACTTCCAACAAATCCTTCAACCACAATTCTCCATCAGCAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACGATCCATCGACTTTCATCCTACAGTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCATGACAACTCCTCCACATTGGAGGAATCTTCCTCCTCAAACCTTTCTTCAAGATGATGATGTTCCTTGGTTGGATGCCCATGATAGTGATATGCACTTGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACAGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACGAAAACTTATCTACTTCCTAATAACTCGGGAGAGGTAGCTTCTGAGGAACAAGAAAATAATCTTTGCATAATATGTCAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 912 0.409 MITVIGLRDMDEMSEGNIFWPNMCRVAVRESIDSHYFQDAYDNEMVYGRRAFNGVQHQPIHMGFPISSTSTPSSEIATNDPQRYHDIARSRSRSDYRFPHPQYQAQLAQEMRGHSIDFHPPLTLPTNPSTTILHQQYQAQPAQEMRGRSIDFHPTVTLPTNPSSTSSVRMTTPPHWRNLPPQTFLQDDDVPWLDAHDSDMHLDIDDMSYEELLELGEQIGNVGTGLLDEIIARQMKTKTYLLPNNSGEVASEEQENNLCIICQNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00055 303 SMART ring_2 259 295 IPR001841 -
Phacun1g00055 303 Pfam RING-H2 zinc finger domain 254 296 IPR024766 GO:0008270
Phacun1g00055 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 57 300 IPR045191 GO:0061630
Phacun1g00055 303 MobiDBLite consensus disorder prediction 154 179 - -
Phacun1g00055 303 MobiDBLite consensus disorder prediction 154 182 - -
Phacun1g00055 303 SUPERFAMILY RING/U-box 253 299 - -
Phacun1g00055 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 300 IPR013083 -
Phacun1g00055 303 ProSiteProfiles Zinc finger RING-type profile. 259 296 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00055 194 300 C3H Transcription Factor Family AT2G15530 46.957 3.67e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00055 K19041 - pvu:PHAVU_011G149000g 492.656