Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00054 ATGAGAGGACATTGCACTATGCAAGAGATGAGAGGAGACACCATCGACTATCATCCTACTCTTACACTTCCAACAAATCCTTCAAGCACTTCTTTAGTGCGCATGATAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGATGCCCATGATAGTGATATGCACTTGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGAATTGGCAACGTAGGCACAGTTTTGTTGGTTGAAATTATTGCAAAGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAGGTAGCTTATGAGCAACAAGAAAATGATCTTTGCATAATATGTCAGGATGACTATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGATACACGAGAAAAATGTTTGTCCCTTATACAAGTCAAAAGCATTGACTCTTGGATAG 519 0.3969 MRGHCTMQEMRGDTIDYHPTLTLPTNPSSTSLVRMITPPHWRNLPPQAFLQDDDVPWLDAHDSDMHLDIDDMSYEELLELGERIGNVGTVLLVEIIAKQMKTKTYLLPNNSGEVAYEQQENDLCIICQDDYKNKQEIGILQCGHGYHADCIRTWIHEKNVCPLYKSKALTLG* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00054 172 SMART ring_2 124 164 IPR001841 -
Phacun1g00054 172 ProSiteProfiles Zinc finger RING-type profile. 124 165 IPR001841 -
Phacun1g00054 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 169 IPR013083 -
Phacun1g00054 172 Pfam RING-H2 zinc finger domain 119 163 IPR024766 GO:0008270
Phacun1g00054 172 SUPERFAMILY RING/U-box 116 163 - -
Phacun1g00054 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 25 169 IPR045191 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00054 59 169 C3H Transcription Factor Family AT2G15530 46.491 6.98e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00054 K19041 - pvu:PHAVU_011G149000g 297.745