Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00053 ATGAGAGGACACTCCATCGACATTCATCCACCACTTACACTTCCAACAAATCCTTCAAGCACATTTCTCTATCCGCAGTATCAAGCACAACCTGTGCAAGAGATGAGAGGACGATCCATCGACTTTCATCCTACAGTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCATGACAACTCCTCCACATTGGAGGAATCTTCCTCCTCAAACCTTTCTTCAAGATGATGATGTTCCTTGGTTGGATGCCCATGATAGTGATATGCACTTGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGAATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 549 0.4135 MRGHSIDIHPPLTLPTNPSSTFLYPQYQAQPVQEMRGRSIDFHPTVTLPTNPSSTSSVRMTTPPHWRNLPPQTFLQDDDVPWLDAHDSDMHLDIDDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSGEDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00053 182 MobiDBLite consensus disorder prediction 43 69 - -
Phacun1g00053 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 179 IPR013083 -
Phacun1g00053 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 21 179 IPR045191 GO:0061630
Phacun1g00053 182 MobiDBLite consensus disorder prediction 1 20 - -
Phacun1g00053 182 Pfam RING-H2 zinc finger domain 146 175 IPR024766 GO:0008270
Phacun1g00053 182 ProSiteProfiles Zinc finger RING-type profile. 149 175 IPR001841 -
Phacun1g00053 182 MobiDBLite consensus disorder prediction 44 69 - -
Phacun1g00053 182 SUPERFAMILY RING/U-box 139 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00053 84 179 C3H Transcription Factor Family AT2G15530 45.045 2.46e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00053 K19041 - pvu:PHAVU_011G149000g 336.265