Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00052 ATGGAGCTTCTGCGGAATGCGTATTCGAATGTCTCAGACGACGAAGAACAACCCAAACGACAGAGATTATCACACTCTTCCTCTAATCCGTCAAAACGACACCTTCCTTCCCCTTCTCCTCCTTTAATCCACCAAAAGCATCCTCCGATTCCCGGAAGTTACATTTCAAAACGACAACGCGCTCTGATGGATCCCACCCCTCCCCCTCTTCCTGACCTGGTTCCTGTTCTTTCTCCGTTCACGCTATCTGGTAGTATCTCAGTTGCTGATATACATCATAATATTTTGTCGTTGTTGAAAAGTAAAGCAAAGGGTCATCAAAGCCAGAATCTGATATCTGAAAAGCTATCTACAACTTTATCCGGGCATACTAATGCAGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGATCACACAATTTGCGTATGGAATGTATGGAGCAGAAATCAGAAGAAAGCATGTGTGCTAAACTTCCACAATGCAGCCGTCAAAGATGTGAAATGGTCTCAGCAAGGGCACTTTCTACTTTCTTGTGGATATGATTGCACATCACGGTTGGTCGATGTTGAAAAGGGAATGGAGACTCAGGTTTTCAGTGAAGATCAAATTGTTGCAGTTATAAAGTTCCATCCAGACAATTCAAATATCTTCCTTTCTGGAGGTTCAAAGGGCCATATCAAATTATGGGATGTCAGAACTGGCAAAGTAGTGCATCATTATAATAGAAACTTAGGTCCGATTCTTGATCTTGAGTTCACAAGGAATGGGAAGCAATTCATTTCTTCTTGTGATGTATCTCAGAGTAATATAAGTGAGAACGCTATTATTGTTTGGGATGTGTCAAGGGAGGTACCGTTGTCTAATCAGGTTTATGCAGAAGCTTATACATGTCCTTGCTTGAGGCTCCACCCATTTGATTCAATCTTTGTTGCTCAGTCAAATGGAAATTATGTTGCAATCTTTACTGCCACCCCACCTTACAGACTCAACAAATATAAGCGATATGAGGGCCATGTGATCTCTGGGTTTCCAATCAAGTGCAATTTCAGCTTAGATGGGAAAAAACTCGCTTCTGGCTCTTCAGATGGCTCTATCTACCTTTATGATTATCAGTCATCCAAAGTTGTGAAGAAAATCAAGGCCCATGACCAAGCATGCATAGATGTTGCCTTCCACCCCATTATACCTAATGTTATTGCTTCATGCTCGTGGGATGGAAGTATTTTGGTATTTGAGTAG 1266 0.4194 MELLRNAYSNVSDDEEQPKRQRLSHSSSNPSKRHLPSPSPPLIHQKHPPIPGSYISKRQRALMDPTPPPLPDLVPVLSPFTLSGSISVADIHHNILSLLKSKAKGHQSQNLISEKLSTTLSGHTNAVNAIHWSSTHAHLLASAGMDHTICVWNVWSRNQKKACVLNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLVDVEKGMETQVFSEDQIVAVIKFHPDNSNIFLSGGSKGHIKLWDVRTGKVVHHYNRNLGPILDLEFTRNGKQFISSCDVSQSNISENAIIVWDVSREVPLSNQVYAEAYTCPCLRLHPFDSIFVAQSNGNYVAIFTATPPYRLNKYKRYEGHVISGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVVKKIKAHDQACIDVAFHPIIPNVIASCSWDGSILVFE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00052 421 CDD WD40 110 421 - -
Phacun1g00052 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 387 IPR001680 GO:0005515
Phacun1g00052 421 Pfam WD domain, G-beta repeat 216 239 IPR001680 GO:0005515
Phacun1g00052 421 Pfam WD domain, G-beta repeat 115 153 IPR001680 GO:0005515
Phacun1g00052 421 Pfam WD domain, G-beta repeat 164 195 IPR001680 GO:0005515
Phacun1g00052 421 Pfam WD domain, G-beta repeat 343 378 IPR001680 GO:0005515
Phacun1g00052 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 248 IPR001680 GO:0005515
Phacun1g00052 421 ProSitePatterns Trp-Asp (WD) repeats signature. 140 154 IPR019775 -
Phacun1g00052 421 MobiDBLite consensus disorder prediction 1 53 - -
Phacun1g00052 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 154 - -
Phacun1g00052 421 SUPERFAMILY WD40 repeat-like 105 420 IPR036322 GO:0005515
Phacun1g00052 421 Gene3D - 95 421 IPR015943 GO:0005515
Phacun1g00052 421 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 21 421 - -
Phacun1g00052 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 244 - -
Phacun1g00052 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515
Phacun1g00052 421 SMART WD40_4 381 421 IPR001680 GO:0005515
Phacun1g00052 421 SMART WD40_4 242 288 IPR001680 GO:0005515
Phacun1g00052 421 SMART WD40_4 337 378 IPR001680 GO:0005515
Phacun1g00052 421 SMART WD40_4 158 197 IPR001680 GO:0005515
Phacun1g00052 421 SMART WD40_4 200 239 IPR001680 GO:0005515
Phacun1g00052 421 SMART WD40_4 113 153 IPR001680 GO:0005515
Phacun1g00052 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 162 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00052 113 291 U-box Gene Family AT2G33340 25.137 2.78e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00052 K24742 - gmx:100790592 735.717