Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00049 ATGGACATTCTTACGTTCGTGATTTTATTTGCATGCATACTTGTTCCCTCTCTCAAGATTTCCGTAGCAGATGATTCTATCAATGTGCCGCAATCGATGAGTGATGGAGAAACCTTGGTGTCAAAAGGTGGAAACTTTGAACTTGGGTTTTTCAGCACAAGTGATTCCCAGAAACGTTACGTGGGCATTTGGTTCAAAAAGGTCCCAGTTCAGACAATTGTTTGGGTTGCTAATGGGGCCAACCCCATCAATGATTCCTCAGGAATCTTAACACTGAACACCACAGGCAATCTTGTTCTCACCCAAAATGGGTCTCTTGTTTGGCGCACCATCTCTGGCAAACTAGCACAGAATCCAGTGGCAGTGCTCTTGGACAGTGGCAATCTTGTGGTAAGAAATGAAGGAGAAACAAACCCTGAGGAGTATTTGTGGCAAAGCTTTGATCATCCATCAAATACACTCTTACCAGGGATGAAGGTGGGGTGGAACCTCCGAACAGGTCTGGAACGGAAAATAACATCTTGGAAAAGTCCAGATGATCCATCCCCAGGTGACATTTCATGGAGTTTAAAACCCTATAATTATCCTGAGATTTATCTAATGCAGGGAACAAAAAAGTTGTATCGGCAGGGACCTTGGAATGGCCTCTTTTATAGTGGAATACCAGATCTACAGAATAACACTATTTTCGGATTCAATTCTGTGCATGATAACGATGAGATTTTCGGTAGCTTTACCCTTGTAAACACTTCTGTACTCTCCATAGGTGTAATATACCAAACAGGTAGATCTACTAACCTTGTATGGGTCGAGGGTGATCCAAATTGGAGGATATACATGTCACTACCGAAAGACTTTTGTGATTCTTATGGCATCTGTGGAGCCTATGGGAAATGCATGAGTACGCTGACGCAAGTGTGCCAATGTTTGAAAGGGTTTAGTCCAAAGTCACCACTAGCGTGGAGTTCATCTGACTGGAGTGAAGGATGTGTCCGCAATAAACCTTTGAGTTGCAACGGTGAAGAGAAAGATGGGTTTGTCAGATTTAAAATGCTCAAAGTTCCTGATACTGCACACACTTGGTTGGATGCAAGTATTGGTTTAGGGGAGTGCAGAGAGAAGTGCTTGAACAATTGTTCTTGTATGGCCTATGCTAATTCAGACATAAGAGGTGCAGGTAGCGGTTGTGTCATGTGGTTTGAGGATCTCATTGACTTGAAGCAGATTCAAACTGGTGGGCAAGATCTATACATCAGAATGTCTGCTTCAGAGTTAGAGAAAGATAAGATCAAGAATGATGAAATTAGTGTACCAACATTTAATTTTTCATATATATCCAATGCCACAAATCATTTTTCACAAAACAACAAATTGGGACAAGGTGGCTTTGGAGCAATTGCAGTTAAGAGACATTCCCAAACTTCTGCACAAGGTCTAGACGAATTAAAAAATGAAGTTATGTTGATCGCAAAACTTCAACATCGTAATCTTAAATTGTTGATTTATGAATTCATGACTAATGGAAGCTTAGACTCCTTTATTTTCGATTCATCAAGACGTGCACTATTAGGTTGGACGAAGCTGCTTGAAATTATTGGTGGAATTGCACGAGGACTTCTCTATCTTCATCATGATTCTAGACTAAAAATTATTCACAGGGATCTCAAAGCTAGTAATATTCTTCTTGATAGTAATATGATTCCAAAAATATCAGACTTTGGTATTGCTAGAACATTTGGACTTGATCAGGATGAAGCAAATACAAATAGATTAATGGGAACATATGGTTATATGGCTCCTGAATATGCTGTGCATGGATATTTCTCAGTCAAATCTGATGTCTTTGCCTTTGGTGTTATTGTGTTAGAGATAATTAGTGGAAGAAAGAATAGAGGATTTTGTGATCCAGATCATCATCTAAATCTTCTTGGACATACTTTGGATTGA 1947 0.3975 MDILTFVILFACILVPSLKISVADDSINVPQSMSDGETLVSKGGNFELGFFSTSDSQKRYVGIWFKKVPVQTIVWVANGANPINDSSGILTLNTTGNLVLTQNGSLVWRTISGKLAQNPVAVLLDSGNLVVRNEGETNPEEYLWQSFDHPSNTLLPGMKVGWNLRTGLERKITSWKSPDDPSPGDISWSLKPYNYPEIYLMQGTKKLYRQGPWNGLFYSGIPDLQNNTIFGFNSVHDNDEIFGSFTLVNTSVLSIGVIYQTGRSTNLVWVEGDPNWRIYMSLPKDFCDSYGICGAYGKCMSTLTQVCQCLKGFSPKSPLAWSSSDWSEGCVRNKPLSCNGEEKDGFVRFKMLKVPDTAHTWLDASIGLGECREKCLNNCSCMAYANSDIRGAGSGCVMWFEDLIDLKQIQTGGQDLYIRMSASELEKDKIKNDEISVPTFNFSYISNATNHFSQNNKLGQGGFGAIAVKRHSQTSAQGLDELKNEVMLIAKLQHRNLKLLIYEFMTNGSLDSFIFDSSRRALLGWTKLLEIIGGIARGLLYLHHDSRLKIIHRDLKASNILLDSNMIPKISDFGIARTFGLDQDEANTNRLMGTYGYMAPEYAVHGYFSVKSDVFAFGVIVLEIISGRKNRGFCDPDHHLNLLGHTLD* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00049 648 SMART serkin_6 452 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phacun1g00049 648 CDD PAN_AP_plant 335 419 - -
Phacun1g00049 648 SUPERFAMILY Protein kinase-like (PK-like) 434 638 IPR011009 -
Phacun1g00049 648 Pfam PAN-like domain 338 406 IPR003609 -
Phacun1g00049 648 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 505 596 - -
Phacun1g00049 648 Gene3D - 19 148 IPR036426 -
Phacun1g00049 648 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Phacun1g00049 648 SMART ntp_6 341 420 IPR003609 -
Phacun1g00049 648 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Phacun1g00049 648 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Phacun1g00049 648 Pfam D-mannose binding lectin 72 176 IPR001480 -
Phacun1g00049 648 SMART blect_4 30 150 IPR001480 -
Phacun1g00049 648 Gene3D Phosphorylase Kinase; domain 1 426 504 - -
Phacun1g00049 648 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 631 - -
Phacun1g00049 648 Gene3D Transferase(Phosphotransferase) domain 1 505 645 - -
Phacun1g00049 648 Pfam Protein tyrosine and serine/threonine kinase 484 628 IPR001245 GO:0004672|GO:0006468
Phacun1g00049 648 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Phacun1g00049 648 ProSiteProfiles Protein kinase domain profile. 384 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phacun1g00049 648 CDD B_lectin 31 150 IPR001480 -
Phacun1g00049 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Phacun1g00049 648 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00049 433 645 Receptor kinase-like Gene Family AT4G23230 55.462 7.54e-82 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phacun1g00049 PK_Tyr_Ser-Thr 3.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00049 - - pvu:PHAVU_011G153500g 1240.33