Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun1g00024 ATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCCAAACACAAGAAGATATTGGAAGGACTTCTTAAACTACAAGAGAATAAGGAATGTGCTGACTGCAAAGCCAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCGGCAACTTTGGACACCTGGCTTCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAACAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTTCGAGAAGAGAAGAGTCCTTCACATTGGCAAAGGCCTGTGGAAAGGGTTGGCCATAGTTATGCAGCTGTGTCTGAGAATAATTTTGAGGATAGGAAGAAAATCCAACCTTCAAATGCTATTCCTGCTACAAGAATTTGTGTTCCTGCTCCTCCCAAAGGGCCTGACCTGGTAACTCCCGTGGCAAAACCTCAAAATGTGGATAAAGTGGAACCTGTTGCACCACCACCCCAAGTTGAAACTTCAAAACAGACTACTGACACCACACCAAATTCATCTTCTAAAGTTGACTTTTCTACGGATCTTTTTGACATGTTATCTATGGATGATCCAAATGAAAAGGGCTCAGGTGCAGCTGAAACTGTTGTTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTACAGAGGCATTGTCAGCTGAAAAGACTGATACCACGAAATCAGTTGACAGTACACCTCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTTAACTCCAGAAAAACCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATGTGGCGTCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTGGCACAACAACAGACTCTTCTAATGGCTGCTGCTGCTAAATCTGGTGGTGTGGATTCCAAGTACTTGGCCAACTTACAGCAACAGCAGTCTCTTCTAATGGCTGCTGCTGCTAAATCTGCTGGTGGGGATTCCAAATTCCCGGCTGGTATACAACAACCTGGATCCAATATTCCTGTCCAAAGTTGGCCAGCTGCTGGCTACCCAATCCCAGGTATAGTGCCCATGGGAAGTCAGGAAGATTTGCAGAAACTAATGCAGACAATGAACTTGACTGCAGCGCATTCGGCAGGGAGTTCAGTTCAGTATCCACAATCTAGTTACTATGCTATGGGGCAAGTTGCTCCAGTTAATGGTTCGTCGACAACGACAGGAGCAAGTAAACCTCAGTCGGCATCTCCGGTTTCACCAGCATATCCAGTATCATCGACCACCTCAAAGACAGGGAGCGATTATGATTTCTCCTCTTTAACACAAGGAATGTTTGCAAAGCACTAA 1524 0.4416 MNEKANVSKELNAKHKKILEGLLKLQENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKSPSHWQRPVERVGHSYAAVSENNFEDRKKIQPSNAIPATRICVPAPPKGPDLVTPVAKPQNVDKVEPVAPPPQVETSKQTTDTTPNSSSKVDFSTDLFDMLSMDDPNEKGSGAAETVVDDNNWAGFQSATEALSAEKTDTTKSVDSTPQSTSGIEDLFKDSPSVTPSLTPEKPQKDVKNDIMSLFEKGNVASPFAMHQQQLAMLAQQQTLLMAAAAKSGGVDSKYLANLQQQQSLLMAAAAKSAGGDSKFPAGIQQPGSNIPVQSWPAAGYPIPGIVPMGSQEDLQKLMQTMNLTAAHSAGSSVQYPQSSYYAMGQVAPVNGSSTTTGASKPQSASPVSPAYPVSSTTSKTGSDYDFSSLTQGMFAKH* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun1g00024 507 CDD ArfGap 19 117 - -
Phacun1g00024 507 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 368 IPR044520 GO:0005096
Phacun1g00024 507 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Phacun1g00024 507 MobiDBLite consensus disorder prediction 271 313 - -
Phacun1g00024 507 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Phacun1g00024 507 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Phacun1g00024 507 MobiDBLite consensus disorder prediction 125 146 - -
Phacun1g00024 507 MobiDBLite consensus disorder prediction 271 311 - -
Phacun1g00024 507 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Phacun1g00024 507 MobiDBLite consensus disorder prediction 461 492 - -
Phacun1g00024 507 MobiDBLite consensus disorder prediction 212 231 - -
Phacun1g00024 507 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Phacun1g00024 507 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Phacun1g00024 507 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Phacun1g00024 507 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Phacun1g00024 507 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Phacun1g00024 507 MobiDBLite consensus disorder prediction 189 231 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun1g00024 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 4.92e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun1g00024 K12486 - gmx:100807561 811.986