Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun120g00044 ATGGAGTCACCACCCAGTAATCACCACGTTATCGATGGTGATGCCAACGACGTTATACCCTTCTCCCACCGCGACGATGAAGAAGACAAGCCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATTTTCATAGGCGGTTTAGCGAGAGAAACCACTATTGCACAATTTATCAAGCACTTTGGTAAATATGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGCTTCGGCTTCATAACTTACGCTGATCCCTCTGTAGTTGACATAGTTATTGAGGATACTCACATTATCAACGGCAAACAGGTTGAGATTAAGCGGACGATACCGAGGGGTGCTGTTGGCTCGAACTCGAAGGACTTCCGAACCAAGAAGATTTTTGTTGGTGGAATTCCTTCTACTGTGAGTGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAGATAATGCGGGATCACTCTACTAATCGTTCACGTGGCTTTGGGTTCATTACCTATGACTCTGAAGAAGCTGTTGATGATCTGTTAGCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCGGAACCAAAAAAGCCTAATCCACCAGCCCCATCATCCAAGCGCTATAATGATGCCCGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAAGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCTCTTGGGTATGCTGGTCGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAATGAGGGTTACGGGGCATATAGTGGTGGTGGTGGTTCCTCTGGTAATGCTTATGGAAGCAGCTATGATGCCAGTCTAGCGGGTGGATATGGGGGGGCTAGTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGAACTGCTCGATATCATCCTTATGGAAGATAG 1110 0.4856 MESPPSNHHVIDGDANDVIPFSHRDDEEDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDIVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVSEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLAVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDARSSYGGGYGDAYDGFGGNFGMGGYRSGGAYGGRGSAYGGFGSEFGGYGRYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGGYGGANEGYGAYSGGGGSSGNAYGSSYDASLAGGYGGASGGSFYGTRGGYGGAGTARYHPYGR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun120g00044 369 Gene3D - 42 121 IPR012677 -
Phacun120g00044 369 SMART rrm1_1 133 206 IPR000504 GO:0003723
Phacun120g00044 369 SMART rrm1_1 43 114 IPR000504 GO:0003723
Phacun120g00044 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 124 245 - -
Phacun120g00044 369 SUPERFAMILY RNA-binding domain, RBD 129 240 IPR035979 GO:0003676
Phacun120g00044 369 Gene3D - 124 240 IPR012677 -
Phacun120g00044 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Phacun120g00044 369 MobiDBLite consensus disorder prediction 1 41 - -
Phacun120g00044 369 SUPERFAMILY RNA-binding domain, RBD 38 121 IPR035979 GO:0003676
Phacun120g00044 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Phacun120g00044 369 MobiDBLite consensus disorder prediction 206 226 - -
Phacun120g00044 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Phacun120g00044 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Phacun120g00044 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Phacun120g00044 369 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 32 369 - -
Phacun120g00044 369 MobiDBLite consensus disorder prediction 18 33 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun120g00044 38 192 Eukaryotic Initiation Factors Gene Family AT1G71770 26.744 3.03e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun120g00044 K12741 - gmx:100813165 490.73