Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun120g00017 ATGGGAGTTCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACCCTCGCAGGGAAAACACTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGCGAAGTGGTTCGCAACGCCCATTTGCTGGGCTTCTTCCGTCGCATTTGCAAGCTTCTGTTCCTCCGCACCAAACCGGTCTTCGTCTTCGACGGCGGGACCCCTGCCCTCAAGCGCCGCACCGTCGTTGCCCGCCGCCGCCAGCGCGAAAACGCCCAAGCCAAAGTCCGCAAAACTGCGGAGAAAATGCTGCTCAATCATTTGAAGACACTAAGGTTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATAAATCTAATCAGAAGGACTTTGTTGGAAGTGATTCAAGAGGAAGTCACGTGAAAGAGATAGATGAAATGTGTGCAGCTAAATATGCAACTGAGGAGGACATAAATTGTTCACAGGCAACAGTATCAACAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAAAACATGCCGGAAAAGGAGTGCCGTCTATTGTAATTAATCCTTCAGAGGAAGAACATGATGCAGCAGAACAGATTCTACTGCCATCAGTAAATTCCGAAGTTGATATAGCTGTATTAGCTGCTTTGCCACAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAACAGAAGGGTTAGTAAAGGAAGCTTACAACCATGAAGAACCTGATGTCAATTATCGAGGCAAGGGTAAAGGGATTCTGCTCAGTGAAGCTGGCATGGCTGGTTGTAGCTCCAGACATGACAATGTTGCATTGAGGACTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGACAAGTTAGTAAACAATGCATCAACTTCTGTTGCGGCTTCCACTGTCGAGGAAGAGGAAGTTGACTACGACGAAGATGAAGAGATGATTCTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCATCATTACCTCCATCAATGCAACTGGACCTTCTTGTTCAGATGAGAGAGCGTTTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGTGAGATAAATGAAGTGCAGAAAGCTGCAGGTGGAGGAGGAGTAGAGGGTGTGCAGACTTCACGGATTGCATCCGAAGCCAACAGAGAATATATATTTTCGTCATCTTTTACTGGCGATAAACATGAACTTACCTCCACCAGCTTAGAGAAAAATAAAAGTACACAACAGAAGGCACAGGGAGCACATCCTTCCCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGGTTTTAATAAATCAAGTGAATTGGTTTGCAATGAACCTGGTGAGCCTGCTGAGGAAAGTATTCAGACATATCTTGATGAGAGGGGTCGATTTCGTGTGAGTAGATCGAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGACTTTGAGCAGGAAAGGGCACAAGTGAACAAGGCTTCAAATATTGGAACAATGAAAAATGTTGAAAATAAGGATTCATCAGAAAGTTCTGGGATCCAGCTTGTTGGTAAATCACAAGAGGCTAATGTTGACTTAGTTCGAGAGAATGTGCAAAATGAACAAATTATGCTTGACCAGAATGCTTCTATAGATATATCTTTTGAATATGGATGCGAAAATGAGTTTGCAAACGGTGAAGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCAGTGGCGATCTTTGGCACTAATTATACTGCAGCAACAGTGCAACCTTCTCATTCTAATTGGGAAGAAGGAACTGTTGAAGGTAAGAGTACTGTTTTTCCTGAACATGATAAGGTGGAATTGAAGTCTTCTGTTGCAGAGGAGGATAATAATAATGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGCTAGCAGCAGCTTACTGGCAGGAAAATATGCATCTCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAATTGAAGTGGATGAAAAACACAAATGTATGTCATTGGTAGATGGGCATTCAAATACGTATGAGAACAAATTGGATCATGATTTAGAACATGGTGATGACCCAATAGGTTTAAATGAAAACACTGGGTTCCGGAATAATAAAAATAATATGGAGGGATTCACTTTGTGTACGGAAGATATTGTTGAAGGTAAGAGTACTGTTTTTCCTGAACATGATAAGGTGGAATTGAAGTCTTTTGTTGCAGAGGAGGATAATAATAATGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGGCAGGAAAATATGCATCTCGAGGGAAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAATTGAAGTGGATGAAAAACACAAATGTATGTCATTGGTAGACGGGCATTCAAATACGTATGAGAACAAATTGGATCATGATTTAGAACATGGTGATGACCCAATAGGTTTAAATGAAAACACTGGGTTCCGGAATAATAAAAATAATATGAAGGGATTCACTTGTACGGAAGATGGTACTGAAAAAATCGAATTACATGAAATTGAAGATGGAGATAAAAAGCATGATCTTGTTTCTGTAAATAATGCACAAACTTACCATTTTCATGGAAGTCCGTCAAAGCCATCTGTGACTTTTAGTTCAAATAAAACTAAGATATTGATTGACACAACTTGCAGATGGGATAGTCAGTCTTGTTCTGAAGATTCAATTTCAGATCCAAAGATAATGATGAAAGACCAGATCCCTGTGGTCGCAGAGAAGCTATTTGATAAACGTGATAATGGTAAAGTGTCTCTCAATCATAACAATACATCTGAGGCTGTTCCAGTTGGTGCAACTGAAGATGAGAAAAAGAACTATATTAATGAATCTGAACCATTTAGTAATTCTACTGACAATACCAAACCCACTATTCATTTGGTGGATTCATCCTTGAAAGAAGCAACAGAAGACCTTATTGAGCCAAAATTTGCTTCAGATGACAATAATGGAAATTTCTTTGACAAAAGGAACAGGAGCCGTGGCAGTGATGTGTTTAATACCCCAGGGGATTTTCCTGCTCTAGCAACTGAGGTTAGCCTTGAGGAAGAAATTAAAATTCTTGGTCAAGAATATATTAACCTAGAGAATGAACAGCGGAAGCTAGAGCGGAATGCAGAATCTGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACCGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACCAGAGAAAAAATAATACGCATGGCTTTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTCTGAATGCATTTCCTGAGGAAGATGGCCTCCTGAAATTCCGGGAGTGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGTTTGGATGCAAAAAGTGGATCAATTACCAGAAAGAAATGGTCAAAAGTTAAAGAAAAGATAAATTCCATAAATTGTGATGCTAAAGAGTCTACATCAGAGCAGAACCTCCCCTGTGCTCCAGAGCAAAATGAGTTGCCAGATTACATCCAAGAAACAAAGCAAACTTTCTTCAATAAGCATGTAATTGATTTCAACCTTTTGTACTCTCCTTTAAAATAA 4080 0.4093 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEVVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKVRKTAEKMLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNKSNQKDFVGSDSRGSHVKEIDEMCAAKYATEEDINCSQATVSTSYNQEELDEMLAASIAAEENGKHAGKGVPSIVINPSEEEHDAAEQILLPSVNSEVDIAVLAALPQSMQLDILAQLKGKKTEGLVKEAYNHEEPDVNYRGKGKGILLSEAGMAGCSSRHDNVALRTDNQDSIDEMLAASIALEENDKLVNNASTSVAASTVEEEEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAGGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTSLEKNKSTQQKAQGAHPSQNLANSILAGNGFNKSSELVCNEPGEPAEESIQTYLDERGRFRVSRSRAMGMRMTRDIQRNLDLMKDFEQERAQVNKASNIGTMKNVENKDSSESSGIQLVGKSQEANVDLVRENVQNEQIMLDQNASIDISFEYGCENEFANGEDDIFSSLVGGNPVAIFGTNYTAATVQPSHSNWEEGTVEGKSTVFPEHDKVELKSSVAEEDNNNESEVEWEEGDCDGASSSLLAGKYASRGQLEEESNLQEAIRRSLEIEVDEKHKCMSLVDGHSNTYENKLDHDLEHGDDPIGLNENTGFRNNKNNMEGFTLCTEDIVEGKSTVFPEHDKVELKSFVAEEDNNNESEVEWEEGDCDGANSSLLAGKYASRGKLEEESNLQEAIRRSLEIEVDEKHKCMSLVDGHSNTYENKLDHDLEHGDDPIGLNENTGFRNNKNNMKGFTCTEDGTEKIELHEIEDGDKKHDLVSVNNAQTYHFHGSPSKPSVTFSSNKTKILIDTTCRWDSQSCSEDSISDPKIMMKDQIPVVAEKLFDKRDNGKVSLNHNNTSEAVPVGATEDEKKNYINESEPFSNSTDNTKPTIHLVDSSLKEATEDLIEPKFASDDNNGNFFDKRNRSRGSDVFNTPGDFPALATEVSLEEEIKILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKIIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFREWVESPDPTILGSLDAKSGSITRKKWSKVKEKINSINCDAKESTSEQNLPCAPEQNELPDYIQETKQTFFNKHVIDFNLLYSPLK* 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun120g00017 1359 Pfam XPG I-region 1163 1244 IPR006086 GO:0004518
Phacun120g00017 1359 Gene3D - 1 168 - -
Phacun120g00017 1359 FunFam DNA repair protein UVH3 1110 1228 - -
Phacun120g00017 1359 MobiDBLite consensus disorder prediction 129 151 - -
Phacun120g00017 1359 FunFam DNA repair protein UVH3 1 146 - -
Phacun120g00017 1359 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Phacun120g00017 1359 Coils Coil 1116 1150 - -
Phacun120g00017 1359 MobiDBLite consensus disorder prediction 466 493 - -
Phacun120g00017 1359 CDD PIN_XPG_RAD2 1146 1230 - -
Phacun120g00017 1359 Gene3D - 1094 1228 - -
Phacun120g00017 1359 CDD PIN_XPG_RAD2 2 92 - -
Phacun120g00017 1359 CDD H3TH_XPG 1232 1308 - -
Phacun120g00017 1359 Gene3D - 1229 1307 - -
Phacun120g00017 1359 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Phacun120g00017 1359 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Phacun120g00017 1359 SUPERFAMILY PIN domain-like 2 1244 IPR029060 -
Phacun120g00017 1359 SMART xpgineu 1160 1229 IPR006086 GO:0004518
Phacun120g00017 1359 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Phacun120g00017 1359 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Phacun120g00017 1359 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Phacun120g00017 1359 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Phacun120g00017 1359 MobiDBLite consensus disorder prediction 129 155 - -
Phacun120g00017 1359 FunFam DNA repair protein UVH3 1229 1286 - -
Phacun120g00017 1359 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 822 1347 - -
Phacun120g00017 1359 ProSitePatterns XPG protein signature 2. 1163 1177 IPR019974 GO:0016788
Phacun120g00017 1359 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1229 1276 IPR036279 -
Phacun120g00017 1359 SMART xpgn3 1 98 IPR006085 GO:0004518
Phacun120g00017 1359 MobiDBLite consensus disorder prediction 688 707 - -
Phacun120g00017 1359 SMART HhH_4 1231 1264 IPR008918 GO:0003677|GO:0003824
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun120g00017 1154 1261 Core DNA Replication Machinery Family AT5G26680 36.937 7.03e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun120g00017 K10846 - gmx:100820295 1225.31