Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun120g00015 ATGGGAGTTCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACCCTCGCAGGGAAAACACTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGCGAAGTGGTTCGCAACGCCCATTTGCTGGGCTTCTTCCGTCGCATTTGCAAGCTTCTGTTCCTCCGCACCAAACCGGTCTTCGTCTTCGACGGCGGGACCCCTGCCCTCAAGCGCCGCACCGTCGTTGCCCGCCGCCGCCAGCGCGAAAACGCCCAAGCCAAAGTCCGCAAAACTGCGGAGAAAATGCTGCTCAATCATTTGAAGACACTAAGGTTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATAAATCTAATCAGAAGGACTTTGTTGGAAGTGATTCAAGAGGAAGTCACGTGAAAGAGATAGATGAAATGTGTGCAGCTAAATATGCAACTGAGGAGGACATAAATTGTTCACAGGCAACAGTATCAACAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAAAACATGCCGGAAAAGGAGTGCCGTCTATTGTAATTAATCCTTCAGAGGAAGAACATGATGCAGCAGAACAGATTCTACTGCCATCAGTAAATTCCGAAGTTGATATAGCTGTATTAGCTGCTTTGCCACAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAACAGAAGGGTTAGTAAAGGAAGCTTACAACCATGAAGAACCTGATGTCAATTATCGAGGCAAGGGTAAAGGGATTCTGCTCAGTGAAGCTGGCATGGCTGGTTGTAGCTCCAGACATGACAATGTTGCATTGAGGACTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGACAAGTTAGTAAACAATGCATCAACTTCTGTTGCGGCTTCCACTGTCGAGGAAGAGGAAGTTGACTACGACGAAGATGAAGAGATGATTCTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCATCATTACCTCCATCAATGCAACTGGACCTTCTTGTTCAGATGAGAGAGCGTTTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGTGAGATAAATGAAGTGCAGAAAGCTGCAGGTGGAGGAGGAGTAGAGGGTGTGCAGACTTCACGGATTGCATCCGAAGCCAACAGAGAATATATATTTTCGTCATCTTTTACTGGCGATAAACATGAACTTACCTCCACCAGCTTAGAGAAAAATAAAAGTACACAACAGAAGGCACAGGGAGCACATCCTTCCCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGGTTTTAATAAATCAAGTGAATTGGTTTGCAATGAACCTGGTGAGCCTGCTGAGGAAAGTATTCAGACATATCTTGATGAGAGGGGTCGATTTCGTGTGAGTAGATCGAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGACTTTGAGCAGGAAAGGGCACAAGTGAACAAGGCTTCAAATATTGGAACAATGAAAAATGTTGAAAATAAGGATTCATCAGAAAGTTCTGGGATCCAGCTTGTTGGTAAATCACAAGAGGCTAATGTTGACTTAGTTCGAGAGAATGTGCAAAATGAACAAATTATGCTTGACCAGAATGCTTCTATAGATATATCTTTTGAATATGGATGCGAAAATGAGTTTGCAAACGGTGAAGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCAGTGGCGATCTTTGGCACTAATTATACTGCAGCAACAGTGCAACCTTCTCATTCTAATTGGGAAGAAGGAACTGTTGAAGGTAAGAGTACTGTTTTTCCTGAACATGATAAGGTGGAATTGAAGTCTTCTGTTGCAGAGGAGGATAATAATAATGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGCTAGCAGCAGCTTACTGGCAGGAAAATATGCATCTCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAATTGAAGTGGATGAAAAACACAAATGTATGTCATTGGTAGATGGGCATTCAAATACGTATGAGAACAAATTGGATCATGATTTAGAACATGGTGATGACCCAATAGGTTTAAATGAAAACACTGGGTTCCGGAATAATAAAAATAATATGAAGGGATTCACTTGTACGGAAGATGGTACTGAAAAAATCGAATTACATGAAATTGAAGATGGAGATAAAAAGCATGATCTTGTTTCTGTAAATAATGCACAAACTTACCATTTTCATGGAAGTCCGTCAAAGCCATCTGTGACTTTTAGTTCAAATAAAACTAAGATATTGATTGACACAACTTGCAGATGGGATAGTCAGTCTTGTTCTGAAGATTCAATTTCAGATCCAAAGATAATGATGAAAGACCAGATCCCTGTGGTCGCAGAGAAGCTATTTGATAAACGTGATAATGGTAAAGTGTCTCTCAATCATAACAATACATCTGAGGCTGTTCCAGTTGGTGCAACTGAAGATGAGAAAAAGAACTATATTAATGAATCTGAACCATTTAGTAATTCTACTGACAATACCAAACCCACTATTCATTTGGTGGATTCATCCTTGAAAGAAGCAACAGAAGACCTTATTGAGCCAAAATTTGCTTCAGATGACAATAATGGAAATTTCTTTGACAAAAGGAACAGGAGCCGTGGCAGTGATGTGTTTAATACCCCAGGGGATTTTCCTGCTCTAGCAACTGAGGTTAGCCTTGAGGAAGAAATTAAAATTCTTGGTCAAGAATATATTAACCTAGAGAATGAACAGCGGAAGCTAGAGCGGAATGCAGAATCTGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACCGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACCAGAGAAAAAATAATACGCATGGCTTTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTCTGAATGCATTTCCTGAGGAAGATGGCCTCCTGAAATTCCGGGAGTGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGTTTGGATGCAAAAAGTGGATCAATTACCAGAAAGAAATGGTCAAAAGTTAAAGAAAAGATAAATTCCATAAATTGTGATGCTAAAGAGTCTACATCAGAGCAGAACCTCCCCTGTGCTCCAGAGCAAAATGAGTTGCCAGATTACATCCAAGAAACAAAGCAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTGTTCTCCACATGTTGATAAATCAACTGAGCCTTTCACATGGGGGAAGCCAGATCATCTTGTTCTTCGGAAATTTTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAATCAGATGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACCCAATTACGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCGAAAATCCGTAGCAAAAGAGTTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCAGCCTTCAGATTTGATAAATGATTCTGCAGAGGAGTTGTCCAAGAATAGGAAGATTGGGAGACTACCCGAGGATAGCACGTTAGAGATTTCAGGGGGAACAGACAAAAGTCTTGAAAGTAGAAGGAAGTCAAAAATAAAACAGTCAACGAAAAGGAAGAATGATAGTGTTGCCAAGGAACAGTCAAAGAAAAAGAAAGTCAATGATGATCCATCTTCAGCACCTAGTACATCAGAGATGGAGAATTTAAAGCCAAGCACGCAGACAGAAGAACAGTGCGATGGTAAGGCATTAATTCGGAATACAACTGGCCGAGGAAGACGTAGAGGTATGGGAATAAAAAGAGGAAGGGACAAGGAGAATCTCAGTTTTGAATCCTCATCTGCTAGCAGTGACATTGATGATCAGGGGCCAAGAGTGCATGTGGATAAGGTTCAAAAAGACGTGAGAAAGTCATTGAGATCTCGGAAACCTGTCAACTATTCATTTGAAGATCCTGAAGATGAAGATGCTGATGCATTTGACCAGAGTAATCAGACTGGTCCAATAGAAGAAAATTTATCTCAGATTCATGGTGCATCTGAAGATGGTGAAACTAATCATCCTAGTACTGGCAATCATGACTCTTCTGATGTCTACCTTAAAATGGGAGGTGGGTTCTGTTTAGATGATGGTGAGACAGACAAGCTGGATACAATTGATGATGTCAATACTTCCACAGTGGATTCTACTCCAGACTTTTCACACTTTTCTGATTGTTTGGATGAATCTAACCGTGATAAAAATAGTTCAGATATGTTATTTTCTGGCACTGAAAAGCCTGAAAATGGGATGGAAGGTGGAGGTGCCCATTATAAATTTGGTATAGAGCCAAATGACCTTGTAAATAGTAGTAGTTATGATCATTCTGAAACCATTTTGAAACCAGAGAATGCTCATAACAATGGTGGAGCCTCCGCTGGAGCTTTTAGTGCTATGCCTTTTCTGAAGAAAAGAAGGAAAAAGTGA 4977 0.4093 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEVVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKVRKTAEKMLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNKSNQKDFVGSDSRGSHVKEIDEMCAAKYATEEDINCSQATVSTSYNQEELDEMLAASIAAEENGKHAGKGVPSIVINPSEEEHDAAEQILLPSVNSEVDIAVLAALPQSMQLDILAQLKGKKTEGLVKEAYNHEEPDVNYRGKGKGILLSEAGMAGCSSRHDNVALRTDNQDSIDEMLAASIALEENDKLVNNASTSVAASTVEEEEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAGGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTSLEKNKSTQQKAQGAHPSQNLANSILAGNGFNKSSELVCNEPGEPAEESIQTYLDERGRFRVSRSRAMGMRMTRDIQRNLDLMKDFEQERAQVNKASNIGTMKNVENKDSSESSGIQLVGKSQEANVDLVRENVQNEQIMLDQNASIDISFEYGCENEFANGEDDIFSSLVGGNPVAIFGTNYTAATVQPSHSNWEEGTVEGKSTVFPEHDKVELKSSVAEEDNNNESEVEWEEGDCDGASSSLLAGKYASRGQLEEESNLQEAIRRSLEIEVDEKHKCMSLVDGHSNTYENKLDHDLEHGDDPIGLNENTGFRNNKNNMKGFTCTEDGTEKIELHEIEDGDKKHDLVSVNNAQTYHFHGSPSKPSVTFSSNKTKILIDTTCRWDSQSCSEDSISDPKIMMKDQIPVVAEKLFDKRDNGKVSLNHNNTSEAVPVGATEDEKKNYINESEPFSNSTDNTKPTIHLVDSSLKEATEDLIEPKFASDDNNGNFFDKRNRSRGSDVFNTPGDFPALATEVSLEEEIKILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKIIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFREWVESPDPTILGSLDAKSGSITRKKWSKVKEKINSINCDAKESTSEQNLPCAPEQNELPDYIQETKQTFFNKHRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKFCWEKFGWIGQKSDELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRVKKAVKGITGKQPSDLINDSAEELSKNRKIGRLPEDSTLEISGGTDKSLESRRKSKIKQSTKRKNDSVAKEQSKKKKVNDDPSSAPSTSEMENLKPSTQTEEQCDGKALIRNTTGRGRRRGMGIKRGRDKENLSFESSSASSDIDDQGPRVHVDKVQKDVRKSLRSRKPVNYSFEDPEDEDADAFDQSNQTGPIEENLSQIHGASEDGETNHPSTGNHDSSDVYLKMGGGFCLDDGETDKLDTIDDVNTSTVDSTPDFSHFSDCLDESNRDKNSSDMLFSGTEKPENGMEGGGAHYKFGIEPNDLVNSSSYDHSETILKPENAHNNGGASAGAFSAMPFLKKRRKK* 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun120g00015 1658 Coils Coil 985 1019 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1358 1393 - -
Phacun120g00015 1658 ProSitePatterns XPG protein signature 2. 1032 1046 IPR019974 GO:0016788
Phacun120g00015 1658 FunFam DNA repair protein UVH3 1 146 - -
Phacun120g00015 1658 SUPERFAMILY PIN domain-like 2 1113 IPR029060 -
Phacun120g00015 1658 FunFam DNA repair protein UVH3 979 1097 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 129 151 - -
Phacun120g00015 1658 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Phacun120g00015 1658 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Phacun120g00015 1658 FunFam DNA repair protein UVH3 1098 1155 - -
Phacun120g00015 1658 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Phacun120g00015 1658 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Phacun120g00015 1658 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 466 493 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1630 1658 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1459 1487 - -
Phacun120g00015 1658 CDD PIN_XPG_RAD2 1015 1099 - -
Phacun120g00015 1658 Gene3D - 1 168 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1498 1533 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1339 1534 - -
Phacun120g00015 1658 CDD PIN_XPG_RAD2 2 92 - -
Phacun120g00015 1658 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1559 1574 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1394 1419 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 1559 1588 - -
Phacun120g00015 1658 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Phacun120g00015 1658 Gene3D - 1098 1176 - -
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 129 155 - -
Phacun120g00015 1658 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1098 1307 IPR036279 -
Phacun120g00015 1658 SMART HhH_4 1100 1133 IPR008918 GO:0003677|GO:0003824
Phacun120g00015 1658 SMART xpgineu 1029 1098 IPR006086 GO:0004518
Phacun120g00015 1658 SMART xpgn3 1 98 IPR006085 GO:0004518
Phacun120g00015 1658 MobiDBLite consensus disorder prediction 688 707 - -
Phacun120g00015 1658 CDD H3TH_XPG 1101 1245 - -
Phacun120g00015 1658 Gene3D - 963 1097 - -
Phacun120g00015 1658 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Phacun120g00015 1658 Pfam XPG I-region 1032 1113 IPR006086 GO:0004518
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun120g00015 1023 1130 Core DNA Replication Machinery Family AT5G26680 36.937 7.81e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun120g00015 K10846 - gmx:100820295 2447.16