Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun120g00010 ATGAATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAATCCAACATAAAGATGGTTACATGAGCTATCCACCACCGGTTTTGCCTCCCCCTTCACCCCCAATTTGGGGTGCATTCCACAAAGAATCAATGTCTTCATCATTATCATCTCCCTCACCACATTCACCTTCATCCTCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTTATCATAGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGAACCCTTCTTCCTCAGCATCTTCCGAATCCAATAGGAACCAGGAAAATGCAACCTCTGATGCTCTTCAAAGGCAGTTGCAACAACTTTTCCATCTACATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAGTTTTCTGAAAAGGATAAGCTCAGGTTGCTCCCTATGTGCAGCCATGCCTTCCATATAAGCTGTATAGACACCTGGCTTTTGTCCAACTCCTCATGCCCTCTTTGTAGGGGAACCCTCCTTACTCCTGGCTTTTCCCTTGAAAATCAAGTGTTTGATTTTGATGATTTGAGGGATGATGGGGGTTGGCCCTGCAATGGGGAAAATGAGTTCACAACTAGGCAGAAAACGGTTGAAATTGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGAATTGGCAAATTCAGAAGGCTTGATGTGGAGGCAGAGGAGGCTGCAGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGATGTTACTCCATGGGATCTTATCAATACGTGCTTGGCAAGTCAGACCTCAGGGTAACCTTGAGCCATGATCGACAAGGTGTTGTACAATTCGTGAAAGGAACAGAAAACTTAGAGAGATTTTCAGTTGAGGGGGATAATGAAGGAAAGAAGATTACAAGTGTCTGTAAAGGTGAGAGTTATTCTGTTTCCAAAATCTGGCAGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCTGATACCCATATGGGTATGCCCTCTTCTCTTAACACCGATTTGCCTTGGATGAGAGAGACAGGAAGGACATGA 1170 0.4385 MNGKWSFDHTHLKMAWIQHQIQHKDGYMSYPPPVLPPPSPPIWGAFHKESMSSSLSSPSPHSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASSESNRNQENATSDALQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFSLENQVFDFDDLRDDGGWPCNGENEFTTRQKTVEIEETVVEKGVFPVRIGKFRRLDVEAEEAAGGETSSNNLDARRCYSMGSYQYVLGKSDLRVTLSHDRQGVVQFVKGTENLERFSVEGDNEGKKITSVCKGESYSVSKIWQWSKKGKFSVSSDTHMGMPSSLNTDLPWMRETGRT* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun120g00010 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 65 354 - -
Phacun120g00010 389 SUPERFAMILY RING/U-box 141 210 - -
Phacun120g00010 389 SMART ring_2 162 203 IPR001841 -
Phacun120g00010 389 CDD RING-H2_EL5-like 161 204 - -
Phacun120g00010 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 209 IPR013083 -
Phacun120g00010 389 FunFam RING-H2 finger protein ATL46 124 209 - -
Phacun120g00010 389 Pfam Ring finger domain 161 204 IPR001841 -
Phacun120g00010 389 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun120g00010 62 361 C3H Transcription Factor Family AT2G18650 44.144 6.80e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun120g00010 - - cave:132183306 518.464