Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun112g00111 ATGTCACTGGAGGCTCTGAAGGAAACTCAACCTTGTTCAACCCAAGAGCCTTCTTCCTCTTCTGCAATTACCCCAACACAGCGCAGTTCAATTCTTAGCCACTACGATTCCCTCTTCCCAATCCACAGAAAACCCCCAAAATCCTCTCTTTCCGACCAGCTTCGCCGCCTTAACGACTCACTATCTCCATCACACTCCAAAACCCTACAGCAAGAAAAAGAAAAAGAGGAACTACTGCAAGAAGAAGAACCTGAGATAGAGAGAGCGAAATTCGCTTCAGTTAAATTGCCACAATTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCTTTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACCATCATGGAGGCATGCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAGCAATAGCATTTCTCGCTGCTGTCTTTGGTAAAGGACAGTCTACTCTCAATGAAAACCAGATACAGAAAAGAGACCCTGCATTAATAATATGCCCAACATCAGTTATCCACAACTGGGATAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAATCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATAACCAGTTTTGACACATACAGGATTCATGGAAATTCTTTGTCAGATGTCAAATGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGCCTCACTGGGACTGTAATGCAAAATAAGATAATGGAACTGTTCAATCTCTATGACTGGGTTTCACCAGGATCCCTTGGAACACGGGAACACTTTCGTTACTTCTATGATGAGCCCCTCAAGCATGGGCAGAGGTCAACTGCTCCTGTTAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATCTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAATAAGCAATCACCTTGAGCTTATCAAACCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCACTGATATTGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTTTAAGTTATGTGAAACATTGTGGTAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGAATTCACAGGGCTACAGCTTCTCAAGACTTGATGGGTCCACTCCTACTAATTTACGCCAATCTCTGGTTGATGATTTCAACTCTAGTTCAAGCAAACAGGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTTAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCACGTCAGGTGTATAAGCAGCAGCTATCGAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTGTTTACCAGTGAGATCGTTGAATTGCATAAAGAACATGGACATGAAACGGGACAACTGGAAAAAGTAAATCTGTCAGAACAAACAGATTCATCGGTATCAGAGTCAGAAACCAGATCATCTTATAAATCGGCAGGGACTGCAACAAGTAAACCAGATCTTGAAGACCTTGGCATTGTATACACTCATCGCAATGAAGACATTGTCAACGTTGGAGCAGTAATTCAAGGGAAAATAAATGCCAACATCCCTTCAAATGATAGCTTAGTCAAGCCAGGCATTTCTTCGGATCATCAAAGAAAAAAACCAGAAAGAAGTAAAGTTCCTTTGATTGATGATATGAAGAAAACCCAATATCAGCTCCTTGCTCAGTCTATGGGCATGGAAGAGCTTGCTTTTAGCAAATGGTTACTATCAGCGACTCCACTGGAGAGAAAAAAAGTGCTTCTTGACTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2424 0.4138 MSLEALKETQPCSTQEPSSSSAITPTQRSSILSHYDSLFPIHRKPPKSSLSDQLRRLNDSLSPSHSKTLQQEKEKEELLQEEEPEIERAKFASVKLPQFQFDHTGPFEPLLLSSHGEFPLVQVPASINCRLLEHQREGVRFLYGLYKNHHGGMLGDDMGLGKTIQAIAFLAAVFGKGQSTLNENQIQKRDPALIICPTSVIHNWDSEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGNSLSDVKWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLYDWVSPGSLGTREHFRYFYDEPLKHGQRSTAPVRFVQIANKRKQHLVEVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGISNHLELIKPNPKDDPDKQSKDAEFAAAVFGTDIDLVGGKTQNESFMGLSYVKHCGKMRALEKLLFSWNSQGYSFSRLDGSTPTNLRQSLVDDFNSSSSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIVELHKEHGHETGQLEKVNLSEQTDSSVSESETRSSYKSAGTATSKPDLEDLGIVYTHRNEDIVNVGAVIQGKINANIPSNDSLVKPGISSDHQRKKPERSKVPLIDDMKKTQYQLLAQSMGMEELAFSKWLLSATPLERKKVLLDYKKKKKMPNG* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun112g00111 807 Coils Coil 69 89 - -
Phacun112g00111 807 CDD SF2_C_SNF 485 587 - -
Phacun112g00111 807 SMART ultradead3 127 321 IPR014001 -
Phacun112g00111 807 SMART helicmild6 493 576 IPR001650 -
Phacun112g00111 807 MobiDBLite consensus disorder prediction 667 694 - -
Phacun112g00111 807 MobiDBLite consensus disorder prediction 1 34 - -
Phacun112g00111 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 629 IPR027417 -
Phacun112g00111 807 MobiDBLite consensus disorder prediction 68 83 - -
Phacun112g00111 807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 313 IPR014001 -
Phacun112g00111 807 Gene3D - 112 362 IPR038718 -
Phacun112g00111 807 MobiDBLite consensus disorder prediction 659 695 - -
Phacun112g00111 807 Pfam Helicase conserved C-terminal domain 493 576 IPR001650 -
Phacun112g00111 807 MobiDBLite consensus disorder prediction 1 83 - -
Phacun112g00111 807 MobiDBLite consensus disorder prediction 51 67 - -
Phacun112g00111 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 363 IPR027417 -
Phacun112g00111 807 Pfam SNF2-related domain 147 402 IPR000330 GO:0005524|GO:0140658
Phacun112g00111 807 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 113 362 - -
Phacun112g00111 807 Gene3D - 371 688 IPR027417 -
Phacun112g00111 807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 620 IPR001650 -
Phacun112g00111 807 PANTHER SNF2/RAD54 FAMILY MEMBER 38 503 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun112g00111 518 619 RAD5 or RAD16-like Gene Family AT3G16600 37.255 1.71e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phacun112g00111 SNF2_N 3.6e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun112g00111 K20098 - gmx:100781003 1328.54