Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun112g00077 ATGGAGGAAATGAGTGAACAAGGACTGTTCAATTTTCGTTCTGAAAGTACTCATTTGAGAGGCACAAACATCTCTCAGCCTAATATGTGCACAGTGGTGACAGATTCAGTGAGAACTAATCTAGATTCCCATTACTTTCTATATGATTATGAAAATGGGATGCTACATAGAATGGCACAGTTTGATGGAGTTCAGCATCAACCTAATCTTAACGTAGATGTTCCAGCTTCATCTAGTTCGGCTGTATCTCTGAATCCATATTTCAATGTCTCTGCTGCTAGTTCTTCAATTGCTCCCCCTAATGCAAGGCACAATGAAATTGTCATTCCCTTGTTACCACGCTATGGTTCTTTGGGATCTATGATGCTACGTGACTCTAACTCTTTGATTCCAAGAAACTATTTAGGGGATCAGCACTTGTTATCACACAGATTTCCCCAGCAGTACCATGTCTTTTATTATCAAACACAGCCTGCGCAAGAGGTTAGAGGTCACTCCATCAACTTTCATCCTCCAGTAACTGCTCCATCATATAGAGTTCCGGCAAATCCTCCAAGCAGTTCTTCAACGTCCATACAAAATGCACCATTTGGCGGCTTTTATATGCACCAACCTCCACCTCATAGAGGCAATATGCACGGGACAGCTCCTGGACACTGGAGGAATCTTCCTCCTGTGGCTTTTCTTCATGATGAACTTCTTGTGTTAGATGAACAGATTAGCAAGATTGACAACGTAGGCATGGGTTTGTTAGAAGAAATTATTGCAAGAGAAATGAAGACAAAAACTTGTTTACTATCTAATAACTTGGAGGGGGCAACTTCTGAGGAACAGGAAACTGATCTCTGCATAATTTGCCAGAATGAATACAAGAACAAAGAGGAGCTTGGAATTCTGCAATGCGGGCATAAATACCACGCAGACTGTATAAGGAGATGGTTACATGAAAAAAAAATGTGTGTCCCATGTGTAAATCAAAAGTATTAG 987 0.4083 MEEMSEQGLFNFRSESTHLRGTNISQPNMCTVVTDSVRTNLDSHYFLYDYENGMLHRMAQFDGVQHQPNLNVDVPASSSSAVSLNPYFNVSAASSSIAPPNARHNEIVIPLLPRYGSLGSMMLRDSNSLIPRNYLGDQHLLSHRFPQQYHVFYYQTQPAQEVRGHSINFHPPVTAPSYRVPANPPSSSSTSIQNAPFGGFYMHQPPPHRGNMHGTAPGHWRNLPPVAFLHDELLVLDEQISKIDNVGMGLLEEIIAREMKTKTCLLSNNLEGATSEEQETDLCIICQNEYKNKEELGILQCGHKYHADCIRRWLHEKKMCVPCVNQKY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun112g00077 328 SMART ring_2 283 323 IPR001841 -
Phacun112g00077 328 SUPERFAMILY RING/U-box 276 323 - -
Phacun112g00077 328 Pfam Ring finger domain 282 323 IPR001841 -
Phacun112g00077 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 327 IPR013083 -
Phacun112g00077 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 75 320 IPR045191 GO:0061630
Phacun112g00077 328 ProSiteProfiles Zinc finger RING-type profile. 283 323 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun112g00077 230 323 C3H Transcription Factor Family AT2G15530 38.298 4.67e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun112g00077 - K19041 pvu:PHAVU_011G149000g 224.557