Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun112g00071 ATGCAGCTCCACCGTGCCTCCTCCGCGGCGAAAAACCTCGCCTGCTTCAGCTTCGCCTTGAAACTCGTGCTGTTGTACGCCGCCGAGGGACAGCCTCAGCACCGCGGTCCCGACCTACATTGGTACTCCGGAATGGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACGGGTGGGGCATGTGGGTATGGTTCGATGGTGGATGTGAAGCCGTTCAGGGCGAGAGTGGGAGCAGTGGGGCCCTTGCTGTTCATGAACGGTGAAGGGTGTGGTGCCTGCTACAAGGTAAGGTGTTTGGACAAGAGCATATGTACGAGACGAGCCGTCACAGTCATAATTACCGACGAGTGCCCCGGTTGCCCCTCTGACCAAACACACTTCGATCTCAGTGGTGCTGCCTTTGGCCGCATGGCCATTGCTGGGGAGAACGGTCCTCTCAGAGACCGCGGTCAAATCCCTGTCATTTACCGAAGAACACCGTGTAAATACCCCGGGAGAAAAATTGCTTTTCATGTTAATGAAGGCTCCACACCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGACGCAGAGGGAGATATTGGCTCCATGCATATACGAGAAGTATGCATCTTTCCTCTCTTCTTGTTACTTATTTTGCCTATTGATATTATATATCCAAAATTATAA 672 0.5312 MQLHRASSAAKNLACFSFALKLVLLYAAEGQPQHRGPDLHWYSGMATWYGDPEGDGSTGGACGYGSMVDVKPFRARVGAVGPLLFMNGEGCGACYKVRCLDKSICTRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREVCIFPLFLLLILPIDIIYPKL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun112g00071 223 CDD DPBB_EXPB_N 41 162 - -
Phacun112g00071 223 Gene3D - 163 204 IPR036749 -
Phacun112g00071 223 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Phacun112g00071 223 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Phacun112g00071 223 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Phacun112g00071 223 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Phacun112g00071 223 SUPERFAMILY Barwin-like endoglucanases 40 166 IPR036908 -
Phacun112g00071 223 SMART dpbb_1 77 157 IPR007112 -
Phacun112g00071 223 SUPERFAMILY PHL pollen allergen 167 202 IPR036749 -
Phacun112g00071 223 Gene3D - 28 162 IPR036908 -
Phacun112g00071 223 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 167 IPR007112 -
Phacun112g00071 223 FunFam Expansin B3 27 163 - -
Phacun112g00071 223 Pfam Expansin C-terminal domain 169 202 IPR007117 -
Phacun112g00071 223 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Phacun112g00071 223 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Phacun112g00071 223 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Phacun112g00071 223 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Phacun112g00071 223 PANTHER EXPANSIN-B3 20 202 - -
Phacun112g00071 223 Pfam Lytic transglycolase 82 156 IPR009009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun112g00071 13 202 Expansin Gene Family AT4G28250 70.000 3.21e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun112g00071 K20628 - gmx:100810778 395.586