Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun112g00030 ATGCTGAGAAAGATGGATGAAGGAGAAATCATCACAAATGCTTTTCCTCAGAACCTAACTGCTTCTGCTGCATCAAATAGTAACAATCCTCCTCCTGCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTTGTAGCCTTATCACCAAAGACACTCATGGCTACCAACAGATTCCTGTGTGAAACTTGTGGGAAAGGTTTCCAGAGGGATCAAAATCTTCAACTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAAAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGATTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCGGTGCAGTCGGATTGGAAAGCACACTCAAAGACCTGTGGTACCAGAGAATACAAATGTGATTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCAAGGCCAGTTTCAAGCACAGAAGAAACAAGCAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCTCCTCAGGCTCAAGAAACAATGGTCAACAACAATTTGAATGAGATTCATCAACTTGGGTCTGCCACAAGCTCAGAAGCAGCATATGGTGGCAACTCACTAGTCCAATGCTCAAATTTTCTACCTTCAAACTATCAACTAAGTTGGGTGTTTGGAACTAAACTTTCCAATGACAGTAACATCCAAAAGCTAACAACAAGCACAACTACATCACTTCCCCTAGGCAACTCGAGTGTTCCTTCTTTGTATAGTTCCCAAAACCAACCCCGTCAAACATGTTCAACAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCCCAAATCGGATCAAGCTCAAGTGACCCTTCATGGCTTGGGAGCATAGGTTTGAAATGTGGTAGCAGTACCCAAGGTCAAGATGGGAATATCAGTAACAAGTTTAGTGGCATGTATGGTTCAAGTTTAGTTCTCAGCACTCTTGGGACTGAACCAGATAACTCTGCATCTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTGCTCAATGAAGAAAATGGAGGGGGGCAATTTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCGCACTTCATCAATCAAAGGGTGGATTTGATTTGA 1293 0.4462 MLRKMDEGEIITNAFPQNLTASAASNSNNPPPALKRKRNLPGNPDPEAEVVALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARPVSSTEETSNQTSRGLPLWMGQTSPQAQETMVNNNLNEIHQLGSATSSEAAYGGNSLVQCSNFLPSNYQLSWVFGTKLSNDSNIQKLTTSTTTSLPLGNSSVPSLYSSQNQPRQTCSTANMSATALLQKAAQIGSSSSDPSWLGSIGLKCGSSTQGQDGNISNKFSGMYGSSLVLSTLGTEPDNSASDLSQMHPPKRRHVLNEENGGGQFRDFLGVGVQNHLPHFINQRVDLI* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun112g00030 430 Gene3D Classic Zinc Finger 60 87 - -
Phacun112g00030 430 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Phacun112g00030 430 MobiDBLite consensus disorder prediction 17 47 - -
Phacun112g00030 430 MobiDBLite consensus disorder prediction 17 33 - -
Phacun112g00030 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 415 IPR031140 -
Phacun112g00030 430 Gene3D Classic Zinc Finger 97 188 - -
Phacun112g00030 430 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Phacun112g00030 430 FunFam protein indeterminate-domain 12-like 43 111 - -
Phacun112g00030 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Phacun112g00030 430 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun112g00030 31 416 IDZ Gene Family AT1G03840 50.749 3.71e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phacun112g00030 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun112g00030 K25870 - gmx:100790620 709.138