Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun112g00028 ATGCTGAGAAAGATGGATGAAGGAGAAATCATCACAAATGCTTTTCCTCAGAACCTAACTGCTTCTGCTGCATCAAATAGTAACAATCCTCCTCCTGCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTTGTAGCCTTATCACCAAAGACACTCATGGCTACCAACAGATTCCTGTGTGAAACTTGTGGGAAAGGTTTCCAGAGGGATCAAAATCTTCAACTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAAAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGATTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCGGTGCAGTCGGATTGGAAAGCACACTCAAAGACCTGTGGTACCAGAGAATACAAATGTGATTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCAAGGGTAAATGCATCGTCTGACATTAACGCTTCTTTAGGGCGTAACATTGGTTACAACGTAATTGGAACTTCCCTAGGCCCTAACATGGGAACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAAGCACAGAAGAAACAAGCAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCTCCTCAGGCTCAAGAAACAATGGTCAACAACAATTTGAATGAGATTCATCAACTTGGGTCTGCCACAAGCTCAGAAGCAGCATATGGTGGCAACTCACTAGTCCAATGCTCAAATTTTCTACCTTCAAACTATCAACTAAGTTGGGTGTTTGGAACTAAACTTTCCAATGACAGTAACATCCAAAAGCTAACAACAAGCACAACTACATCACTTCCCCTAGGCAACTCGAGTGTTCCTTCTTTGTATAGTTCCCAAAACCAACCCCGTCAAACATGTTCAACAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCCCAAATCGGATCAAGCTCAAGTGACCCTTCATGGCTTGGGAGCATAGGTTTGAAATGTGGTAGCAGTACCCAAGGTCAAGATGGGAATATCAGTAACAAGTTTAGTGGCATGTATGGTTCAAGTTTAGTTCTCAGCACTCTTGGGACTGAACCAGATAACTCTGCATCTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTGCTCAATGAAGAAAATGGAGGGGGGCAATTTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCGCACTTCATCAATCAAAGGGTGGATTTGATTTGA 1404 0.443 MLRKMDEGEIITNAFPQNLTASAASNSNNPPPALKRKRNLPGNPDPEAEVVALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSDINASLGRNIGYNVIGTSLGPNMGTHFSSIFKPVSSTEETSNQTSRGLPLWMGQTSPQAQETMVNNNLNEIHQLGSATSSEAAYGGNSLVQCSNFLPSNYQLSWVFGTKLSNDSNIQKLTTSTTTSLPLGNSSVPSLYSSQNQPRQTCSTANMSATALLQKAAQIGSSSSDPSWLGSIGLKCGSSTQGQDGNISNKFSGMYGSSLVLSTLGTEPDNSASDLSQMHPPKRRHVLNEENGGGQFRDFLGVGVQNHLPHFINQRVDLI* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun112g00028 467 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Phacun112g00028 467 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Phacun112g00028 467 MobiDBLite consensus disorder prediction 16 33 - -
Phacun112g00028 467 FunFam protein indeterminate-domain 12-like 43 111 - -
Phacun112g00028 467 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Phacun112g00028 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 452 IPR031140 -
Phacun112g00028 467 Gene3D Classic Zinc Finger 60 87 - -
Phacun112g00028 467 Gene3D Classic Zinc Finger 97 188 - -
Phacun112g00028 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Phacun112g00028 467 MobiDBLite consensus disorder prediction 16 47 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun112g00028 31 453 IDZ Gene Family AT1G03840 49.796 5.41e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phacun112g00028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun112g00028 K25870 - gmx:100790620 784.252