Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun112g00002 ATGGTCGCCAAGGACAAAACGGTCATCAAGAATAAGAAGCCAAACAATGTCGCCGACGAGGTCCATTACCGCGGCGTCCGCAAGCGTCCCTGGGGTCGCTACGCCGCCGAGATCCGCGACCCTGGCAAGAAATCCCGGGTCTGGCTCGGTACTTTCGACACCGCAGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCACGTAACTTTCGTGGCCCCAAAGCCAAAACCAACTTCCCCCCTCCCCCCGACACCGCCAACAACAACAAAAACGACCTTGACAACAACAAAAACAAAGCTAGCAGCAGCAGCAGCCCTAGCCAGAGCAGCACCGTCGAGTCCGCTGCCCCGGAGCGTGACGTCACGCGCCGCCCTGTCTCTGCCCTCATCGACCGCTTTCCCTTCCTCCCGATCCAGCAGCAGCTACTCGTGACACCGGTCACTCCCGTGCGTCCGGTTTTTCTCCTCGACCGGGCCCATTACCTCACCCACCAATTCCCTTTCCAGTTCGAACCGGCCCCGGTTCAGAGTGACTCCGATTCCTCCTCCGTTGTTGATTGCCTACCCAAAAGAGAACTCAATCTCGATCTTAACCTGGCTCCTCCGATGGATTATTAA 615 0.5886 MVAKDKTVIKNKKPNNVADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPPPPDTANNNKNDLDNNKNKASSSSSPSQSSTVESAAPERDVTRRPVSALIDRFPFLPIQQQLLVTPVTPVRPVFLLDRAHYLTHQFPFQFEPAPVQSDSDSSSVVDCLPKRELNLDLNLAPPMDY* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun112g00002 204 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Phacun112g00002 204 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Phacun112g00002 204 MobiDBLite consensus disorder prediction 66 122 - -
Phacun112g00002 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 134 - -
Phacun112g00002 204 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Phacun112g00002 204 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Phacun112g00002 204 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Phacun112g00002 204 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Phacun112g00002 204 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Phacun112g00002 204 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Phacun112g00002 204 MobiDBLite consensus disorder prediction 80 115 - -
Phacun112g00002 204 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun112g00002 20 202 AP2-EREBP Transcription Factor Family AT5G44210 49.198 5.58e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phacun112g00002 AP2 5.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun112g00002 K09286 - gmx:100801924 269.24