Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04266 ATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCGGTCACGGCCAGGTCTCGCCGGGTCACCGCCGATTACCTGTTGCTGGATTTGAAGAAGCGGGCATCTGAGGTCATCCACTCCGACGATGACTTCGAGGCTGATTTTAGGAATTTCAAGGACGATTCCGACAGCGACGCCGACCACCAAGTCAAACCCTTTGCTTTCTCCGCCTCTTCTCGGCCGGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGATGCTGAAGCGCGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAAGCTTCCGTGAAACATTCTAAGGTAAATCAACTGGGAAATCAGAAGACTGTTCAACCCAATGTCCACATGTTCAATGCTGGGAACAATCAGAAGGACCTTTATTGTCCTGTGGATCTGGTGGAACAGAAACCCCTAGTTAACCAGTTTGCTGACATGGGTTCCTTCTCTAGCAATGGAAATGGGCTCAGATCTCTTTCTTCGACTGATGATGTCACCCTTTACTTCAGTTCAGATCAGGGGAGTAATTCATTTGATTATGCAGATCTTGGGTGGAGTGAACAGGCCTCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGCGATTCTCATTTTGTACAGGATGCGAACCATCAGACTAATTCTCAGGATGTGGTATCTATGCAAGATGGTTCTTCCAAGACACTATCTGAGGAGCTCGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1068 0.4766 MCGGAIISDFIPAAVTARSRRVTADYLLLDLKKRASEVIHSDDDFEADFRNFKDDSDSDADHQVKPFAFSASSRPAVKSVAFNGGAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEASVKHSKVNQLGNQKTVQPNVHMFNAGNNQKDLYCPVDLVEQKPLVNQFADMGSFSSNGNGLRSLSSTDDVTLYFSSDQGSNSFDYADLGWSEQASKTPEISSMLSAPLDCDSHFVQDANHQTNSQDVVSMQDGSSKTLSEELVDIESELKFFQMPYLEGSWDDTSLESLLSCDTTQDGGNLMNLWSFDDIPSMAGGVF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04266 355 PANTHER DNA-BINDING DOMAIN 71 269 IPR044808 GO:0003700|GO:0009873
Phac9g04266 355 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Phac9g04266 355 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Phac9g04266 355 FunFam Ethylene-responsive transcription factor 2 96 155 - -
Phac9g04266 355 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Phac9g04266 355 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Phac9g04266 355 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Phac9g04266 355 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Phac9g04266 355 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Phac9g04266 355 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04266 Phac-Chr9 40076668 40079102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04266 1 355 AP2-EREBP Transcription Factor Family AT1G53910 45.226 4.04e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac9g04266 AP2 1.8e-12 CL0081