Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04243 ATGAGAGCTCCCAGTCCCAGAGGAAGACCAACCCCATCAACATCAAAAGCAACACCACCCTCTTCCATCTACATGATTTCCAATTTAATGGTCTTTGTCACAGTACTGTTTCTTCTCTCTTTGTTCCTTGTTCCTGTTCAAGCCGCCTCCTGTAACCAACTGGATAGAGACTCACTCTTGGCCTTCTCCAGGAACTTATCCACTCCTTCTCCTCTCAATTGGTCTTCTTCTGTTGATTGTTGTCTCTGGGAAGGCATTCTTTGTGATGAGGATTTCAGAGTCATACATCTGTTGCTACCATCCAGGGGTCTCGCTGGCTTCATCTTCCCATCTCTCACAAATCTCACTGCTCTCTCCCACCTTGATCTATCCCATAACCGCTTATCCGGTAATCTCCCAAACCAATTTTTCTCTCTTCTTAATCACCTGCAGAATCTTGATTTAAGCTACAATCGTCTCTCTGGTGAATTGCCACCCTTTGTTGCTAATACCAGTGGCAATACTCTCCGGAAGCTTGATCTGTCAAGTAATTTATTCCACGGAAAACTCCCACTTTCTCTCCTTCAGCACCTGGGAGATGCAGTCGCAGGAGGGACTTTGACATCTTTCAATGTTAGTAACAACAGCTTCACGGGTCAAATTCCCACTTCTCTCCTCTGTAGTAACCACAGTAGCTCCTCCTCTCTCAGATTCTTGGATTATTCCTCCAATGATTTCTCTGGCATGATTCAGCCAGGATTAGGAGCATGCTCCAAGCTGGAGAAATTTCGAGCAGGCTCCAACTCACTATCCGGGCCCCTCCCTGATGATATTTTCAATGCTGTTGCTCTCAAAGAAATCTCCTTGCCCCTCAATAAACTCAGTGGAACCCTTGAGGGCATTGTTAACCTTGCCAACCTCACAGTTCTGGAGCTCTACTCCAATAATTTCACCGGGCCCCTTCCCTCGGATATTGGTAAGCTCTCCAAATTGGAACGTTTACTCCTTCATGCCAACAAAATAAATGGTACTCTGCCCCCATCTCTAATGGAGTGTGTCAATCTTGTGATGTTGGATGTAAGGCTCAACTTGTTGGAGGGAAGCCTCTCAGAATTGAATTTCTCTGGACTCCTCAGACTCTCTGCACTTGACCTTGGCAACAATAGTTTCACTGGTATTATACCACCAACCATGTATGCCTGTAAATCACTTAAAGCAGTAAGGCTAGCATCTAACAAGTTTGAGGGACAGATCTCAGCTGACATACTTGGGCTGCAGTCTCTGGCTTTCCTATCAATTTCTACCAACAAACTCAGTAATGTCACTGGGGCCCTGAGTTTGCTTATGGGACTCAAGAACCTTAGCACTCTCATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCACATGATGTCAACGTAACAAACCCAGATGGATTCCAAGGGATCCAAGTTCTTGGTTTGGGCGGTTGTAATTTCACAGGCCAAGTACCACACTGGCTTTATAACCTGAAGAAGCTGGAGGTCTTGGATTTGTCCTATAATCAAATAAGTGGTTCAATTCCTCCTTGGCTGCACACACTTCCTGAGCTTTTCTACGTAGACTTGTCTTTTAACCTCCTCACAGGAATGTTTCCAGTTGAGCTCACAACGCTTCCAGCACTAACTTCACAAAAGGCCTATGACGAAGTAGAAAGGACTTATCTGGAGTTACCCGTGTTTGCTAATGCCAACAATGTTTCTCAGATGCAATATAATCAGATTTCCAACCTACCACCAGCAATATATCTTGGAAACAATAGCCTCAATGGCAGTATCCCTGTGGAGATTGGCAAACTGAAAGTTCTTCATCAGCTGGACCTTAGTAACAACAATTTCTCTGGCAACATCCCATCGGAGATTTCTAACTTGATTAACCTAGAGAAACTATACCTCTCAGGAAACCAACTTTCCGGTGAAATTCCTGTTTCACTCAAAAACTTGCATTTTTTGTCTGCTTTCAGTGTAGCATACAATAATCTTCAAGGACCCATACCCACTGGTAGTCAATTTGATACTTTCTCCTCTTCCAGCTTCGAAGGCAACCCACAGTTGTGTGGTGCAGTTGTTCGGCGCTCTTGTGTTCCTCAACAGGGTACTACTACTGCACATGGTCACAGCTCAAACAAAAAATTGATCATTGGATTTGCCATTGCAGCCAGTTTTGGCATTGTTTCCTTGGTTTCAGTGTTGATAGTGTGGGTAATATCCAAGAGAAGGATCAATCCTGGTGGAGACGCTGACAAGATTGAACTAGAATCGATTTCTATCAACTCTTACAGTGGGGTTCATCCTGAGGTTGACAAAGAGGCTAGCCAAGTGGTACTGTTCCCTAATAAAACAAGTGAAATCAAGGACCTTACCATCGTTGAAATATTAAAAGCTACTGAAAACTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACATTACCCAATGGCACTGCTCTGGCCATCAAGAAACTTTCAGGAGATTTGGGTATTATGGAAAGGGAATTTAAGGCAGAAGTAGAGGCTTTGTCTACAGCACAGCATGAAAATTTGGTTGCACTACAAGGCTACTGTGTGCATGAGGGTGTTCGGCTTCTCATATACTCCTACATGGAAAATGGAAGTCTGGATTACTGGCTGCATGAGAAGGCTGATGGTCCATCTCAGATTGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTTTGGATTGGCTTACATGCATCAAATATGTGAACCACATATAGTGCATCGTGATATAAAGTCAAGCAATATACTTCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGGCTGGCTCGACTCATTCTTCCTTATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATACCCCCGGAGTACGGACAAGCATGGGTGGCAACTTTGAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTAACGGGGAGGAGGCCTGTGGATGTAAGCAAGCCAAAAATGTCAAGGGAGTTAGTTTCCTGGGTTCAACAAATGAGGAGCGAAGGAAAACAAGATCAAGTCTTTGATCCATTTATGAGAGGCAAGGGCTTTGAAGAACAGATGCTGCAGGTTCTTGATGTAGCCTGCATGTGTGTCAACCATAATCCTTTCAAGAGACCGAGCATCAGAGAAGTTGTTGAATGGCTGAGGAATGTAGCATTATCCAACCAGCAATTGAATAAAGACTAG 3270 0.4388 MRAPSPRGRPTPSTSKATPPSSIYMISNLMVFVTVLFLLSLFLVPVQAASCNQLDRDSLLAFSRNLSTPSPLNWSSSVDCCLWEGILCDEDFRVIHLLLPSRGLAGFIFPSLTNLTALSHLDLSHNRLSGNLPNQFFSLLNHLQNLDLSYNRLSGELPPFVANTSGNTLRKLDLSSNLFHGKLPLSLLQHLGDAVAGGTLTSFNVSNNSFTGQIPTSLLCSNHSSSSSLRFLDYSSNDFSGMIQPGLGACSKLEKFRAGSNSLSGPLPDDIFNAVALKEISLPLNKLSGTLEGIVNLANLTVLELYSNNFTGPLPSDIGKLSKLERLLLHANKINGTLPPSLMECVNLVMLDVRLNLLEGSLSELNFSGLLRLSALDLGNNSFTGIIPPTMYACKSLKAVRLASNKFEGQISADILGLQSLAFLSISTNKLSNVTGALSLLMGLKNLSTLMLSQNFFNEMMPHDVNVTNPDGFQGIQVLGLGGCNFTGQVPHWLYNLKKLEVLDLSYNQISGSIPPWLHTLPELFYVDLSFNLLTGMFPVELTTLPALTSQKAYDEVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPVEIGKLKVLHQLDLSNNNFSGNIPSEISNLINLEKLYLSGNQLSGEIPVSLKNLHFLSAFSVAYNNLQGPIPTGSQFDTFSSSSFEGNPQLCGAVVRRSCVPQQGTTTAHGHSSNKKLIIGFAIAASFGIVSLVSVLIVWVISKRRINPGGDADKIELESISINSYSGVHPEVDKEASQVVLFPNKTSEIKDLTIVEILKATENFSQANIIGCGGFGLVYKATLPNGTALAIKKLSGDLGIMEREFKAEVEALSTAQHENLVALQGYCVHEGVRLLIYSYMENGSLDYWLHEKADGPSQIDWPTRLKIAQGASFGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVSKPKMSRELVSWVQQMRSEGKQDQVFDPFMRGKGFEEQMLQVLDVACMCVNHNPFKRPSIREVVEWLRNVALSNQQLNKD* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04243 1089 ProSiteProfiles Leucine-rich repeat profile. 499 522 IPR001611 GO:0005515
Phac9g04243 1089 ProSiteProfiles Leucine-rich repeat profile. 632 655 IPR001611 GO:0005515
Phac9g04243 1089 SUPERFAMILY Protein kinase-like (PK-like) 784 1076 IPR011009 -
Phac9g04243 1089 SMART LRR_typ_2 370 394 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 630 653 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 497 521 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 321 345 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 606 629 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 444 467 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 418 440 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 297 320 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 115 139 IPR003591 -
Phac9g04243 1089 SMART LRR_typ_2 140 164 IPR003591 -
Phac9g04243 1089 FunFam Receptor-like protein 2 53 169 - -
Phac9g04243 1089 Gene3D Transferase(Phosphotransferase) domain 1 881 1089 - -
Phac9g04243 1089 Gene3D Ribonuclease Inhibitor 293 367 IPR032675 -
Phac9g04243 1089 Gene3D Ribonuclease Inhibitor 196 292 IPR032675 -
Phac9g04243 1089 FunFam Leucine-rich repeat receptor-like protein kinase 881 1087 - -
Phac9g04243 1089 Gene3D Phosphorylase Kinase; domain 1 767 880 - -
Phac9g04243 1089 Pfam Leucine rich repeat 476 534 IPR001611 GO:0005515
Phac9g04243 1089 Pfam Leucine rich repeat N-terminal domain 55 89 IPR013210 -
Phac9g04243 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Phac9g04243 1089 SUPERFAMILY L domain-like 51 289 - -
Phac9g04243 1089 Gene3D Ribonuclease Inhibitor 368 707 IPR032675 -
Phac9g04243 1089 PRINTS Leucine-rich repeat signature 497 510 - -
Phac9g04243 1089 PRINTS Leucine-rich repeat signature 118 131 - -
Phac9g04243 1089 PANTHER LEUCINE RICH REPEAT KINASE 2 224 1080 - -
Phac9g04243 1089 SUPERFAMILY L domain-like 224 550 - -
Phac9g04243 1089 SUPERFAMILY L domain-like 576 692 - -
Phac9g04243 1089 SMART LRR_sd22_2 497 512 - -
Phac9g04243 1089 SMART LRR_sd22_2 630 656 - -
Phac9g04243 1089 SMART LRR_sd22_2 115 134 - -
Phac9g04243 1089 SMART LRR_sd22_2 140 155 - -
Phac9g04243 1089 Pfam Leucine Rich Repeat 632 654 IPR001611 GO:0005515
Phac9g04243 1089 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 772 880 - -
Phac9g04243 1089 FunFam Tyrosine-sulfated glycopeptide receptor 1 367 705 - -
Phac9g04243 1089 SMART serkin_6 805 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac9g04243 1089 Gene3D Ribonuclease Inhibitor 52 193 IPR032675 -
Phac9g04243 1089 ProSiteProfiles Protein kinase domain profile. 805 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac9g04243 1089 ProSitePatterns Protein kinases ATP-binding region signature. 811 834 IPR017441 GO:0005524
Phac9g04243 1089 Pfam Protein kinase domain 806 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04243 Phac-Chr9 39996142 39999522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04243 1 739 Miscellaneous Gene Families AT1G17240 50.267 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phac9g04243 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04243 - - gmx:100782574 1834.69