Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04240 ATGGACTTGATACAACAAGTTAAAGGCAACTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGGCAGAGATTATGGGTATCACCAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGAGTTGTCACTCGGGAGTACCAAGGAAGAGGAGAGGGAGCGCAATTTGCAACATCATCATCAGCATCATCATCATCAGCATCCACAACAGCAGCAGCATGAACATCATCATGAGGGTCACGGAACTTGTTCAAACGCGAAGGAAGCAGTGGAGAAAGAGCAGATGTTTGAGAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCCTCGTCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGATACTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTTGATGCAGGCGACACCGTCTCCTTCCAGCGTGGCCTTGGCGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGAACCGATCATGCTCATCCTCCCTCTGACCCCTCAGCTTCCCCTTTGTTTCTTCCCTCCATAAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGTCCCACCCCGCTACCACCACGATCACCACTTTCACCATCTCAATTACAGCAACCTCTTCACTTTTCAGCACCAACACCAGTACCTCGGTCATGTTCATGGTGCTGCCGCCACCGCTGCTTCTCATCATCACAACAACTACGGCGAGCATAATTCGGGATCTGGGCCCGGCTCACTCTATTACCTCAGGTCAATGGGTGGTGGTGATCAAAACTTGGGAGGGAGAGGGAACAGCATTGTACCCATGATCATCGATTCTGTGCCGGTCAACGTGGGTCACCATAACCACCGCCATGGACATGGCGGGATGGCGAGTGGCGGTGGTAGTGCCACCACAAGCAGCGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGCCGAAGATTCTAGAAGCTTGTCCTTGGGTTCGGGAAATTCTCTTCCTTCTTCTTCTTCGTCTCTACAGCAACGGTTGAGGATTCCCCATGAAGACCCCCTTTCTTCTTCAGCAAGGTTTGGGGATCACAAAGGTGGAAGCGGGAGTTCTCTGCTGTTCGATTTGGATCCCTCCTTGCAGTAG 1308 0.5199 MDLIQQVKGNYSDSREEEEEEEVAEIMGITREAESSRLHHQDAASNFGKKLDLMELSLGSTKEEERERNLQHHHQHHHHQHPQQQQHEHHHEGHGTCSNAKEAVEKEQMFEKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFQRGLGDMYRHRLYIDWRRRTDHAHPPSDPSASPLFLPSIRWYSLPATSPIVPPRYHHDHHFHHLNYSNLFTFQHQHQYLGHVHGAAATAASHHHNNYGEHNSGSGPGSLYYLRSMGGGDQNLGGRGNSIVPMIIDSVPVNVGHHNHRHGHGGMASGGGSATTSSGKRLRLFGVNMECASSAEDSRSLSLGSGNSLPSSSSSLQQRLRIPHEDPLSSSARFGDHKGGSGSSLLFDLDPSLQ* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04240 435 MobiDBLite consensus disorder prediction 339 358 - -
Phac9g04240 435 MobiDBLite consensus disorder prediction 1 22 - -
Phac9g04240 435 MobiDBLite consensus disorder prediction 378 401 - -
Phac9g04240 435 MobiDBLite consensus disorder prediction 378 435 - -
Phac9g04240 435 MobiDBLite consensus disorder prediction 60 97 - -
Phac9g04240 435 ProSiteProfiles B3 DNA-binding domain profile. 110 215 IPR003340 GO:0003677
Phac9g04240 435 Pfam B3 DNA binding domain 110 214 IPR003340 GO:0003677
Phac9g04240 435 Gene3D - 103 221 IPR015300 -
Phac9g04240 435 SUPERFAMILY DNA-binding pseudobarrel domain 108 213 IPR015300 -
Phac9g04240 435 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 34 381 IPR044800 GO:0003700
Phac9g04240 435 CDD B3_DNA 109 197 IPR003340 GO:0003677
Phac9g04240 435 SMART B3_2 110 215 IPR003340 GO:0003677
Phac9g04240 435 FunFam B3 domain-containing protein 103 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04240 Phac-Chr9 39963883 39966264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04240 100 375 RAV Transcription Factor Family AT2G46870 51.064 3.20e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac9g04240 B3 1.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04240 K09287 - gmx:100812161 523.472