Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04239 ATGGAGGATGGGAGTAGGGTTCCGGCAGGGGAGGACCCCTCTTACTGGCTGGATGCGTGTGAAGACATATCCTGTGATTTCATTGATTTTGATGTCTCTTCCATAGTTTCAGAGCAACCAGAGAACCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTTTGGACAGCATAAAAAACGGTGCTGGTCTCCCTCTCAATCATGGTGAGCCTGCTTCCAACTCTAATGGCACAGCAGAAGGAGCAGGAGAAGTCTGGTTTCCCTCCAATGCCACTTTGGCGGATGGGGGAAATCACCATGCTCCTGTTCCTGCCCCCACTGATGCTGCTTTTGACCATTCTGCTACTGTTCGGAATAATGGGTCGAGTAAGGTGTCTAATGGGAATGAAGGGGGAATTTTGGTTAATCATCCTCAAGAAAGAGGGGTTCTGAATGGTGGCCATGAGGTTGATAGTGAAGAAAGGTGCAGCAAAAGGGCTCGGATTGGTGGCTACAAGAATGAGAGGCCTCATTATGGCAGAGGTAATTATCAAGGCAAGGAGAGGGAGAGGTGTTTTAATAATAACAGAAAGAGGCCATGGGATAGGGATGAGGTTGATAGGAGGGATAGGGATGGTGGTGGAAGGAAAAGGGAGCATCATGGTGCTGTTGGCAGGAGGGATGTTAGAGATAGAGATTGGAGAGATAAAGAACCTAGGGGTTACTGGGAGAGGGATAAGTTAGGTAACAATGACATGGTGTTTCGCCCAGGCGCTTGGGAACCTGACCGTAATCGAGAAGAAAAAATGGCTATTGATGTGAAAGAGAACAATGGAAAGCTTGATAAGAAATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAATTAGATGTTCTTGACCAGGCAAAGAGGAAAAATACTATAGCTTTCCTTGAAACCGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAAGAGAGTTTGCAGAAGCAAAATAAGAAAATGCTTGCAGTATTCTTAGTTCCAAAAGTTCCACTAGTTTACCAGCAAGCTGAAGTAATCCGTGAGCGTACTGGTTATCAAGTAGGCCACTACTGTGGAGAAATGGGACAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGATACCAAACATGTTTTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGTCACCATGCCGTGAAGAAACACCCATATTCACTGGTGATGTCCGAGTTCTACCATACAACTCCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGCAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTCGAGTATGATAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCCAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCCAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGAGTTTCTGAAAGAACTGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATACAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTTTCTCTTCTGAAATGTCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATGCTGATATTGATGACTCAGAGAATGGTGCAGCTCAAAGTTTGTCTGAACATGAAGAGATGGAAGAAGGGGAACTTCCAGACAGTCATGTTGTCTCTGGCGGAGAGCACGTCGATGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTTAAGTATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTTAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCCACCAAATGCAAGATACAATTTCCAAATTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCAGGCAATGCAACGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCCAGGGGACGTGCCAGAAAACCTGGATCTGATTACATCCTGATGGTGGAGAGGGGCAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGTAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTAATTTCTGTTGAAACCAGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGTCTTAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCGAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCATGAAAAAACAGGATGTCCCACAGAATATTCTTGCAAGCTTCAACTGCCTTGTAATGCACCATTTGAAAATCTCGAGGGCCCAATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGATGAGCAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAACTCCAAATTGCTTCATCTTTACATGTATGCTGTAAAGTGCGAAAATATTGGCCATTCAAAGGACCCGTTCTTGATTCAAGTTTCAAATTTTGCAATACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTAACTACAAAGGCATCTCTTGTCTTTATGGGGTTGATAAATATCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGACTGATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGTTTGGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCGTCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCCACCTATGGAATCCGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCAAGTAGAGATTCCATGCAAACACAAAAACAAATTAATATGACTACCAATGGAAAATTGATGATGGCAGATACCAGTACTAAGGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCATTCGGGGAAGAGGTTTTATGTTGATTCAATACGCTATGACATGTCAGCTGAAAACTCGTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGCTCATATGCTGATTACTACAAGCAAAAGTATGGAGTTGATTTGGTTTACAAGCAGCAACCTCTAATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGATTTGAGCACAGTGAAGCACATGAAGGGGAATCTGAAGAGACACATGACAAAACTTATTATGTTTTCCTTCCGCCTGAGCTATGCCTTGTACACCCACTGCCTGGATCACTTGTTCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTGAAGAATATGATAAGTTATCCTGTTCAGACTTCAAAGATCTTAGAAGCCTTGACCACTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGACGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCTTAAAATACCCACAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCGTTAAGTAAAGGGCTTCAATCATATATTCAGGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAAGATACCAAGGATGGGGAGTCCTCTTTGTTTGACCAGGAGCGGTCCATTTCTAAAACTGAGAAGATGGATTGTCACACAGATGGATATGATGACGAGATGGAAGATGGCGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTGTCCAGTAAGACACTTGCAGATGTTGTGGAGGCACTAATTGGGGTATATTATGTAGAAGGTGGTAAAAATGCTGCTAATCACCTTATGAAATGGATTGGCATTCAAATTGAGTTTGATCCCGATACGCTGGAGTGTGCTAGAAAGCCATTTAATGTTCCAGACAGCATACTTAGGAGTGTTAATTTTGATACTTTAGAGGGTGCTTTAAATATAAACTTCAAAGACAAGGGGCTGTTGGTAGAATCCATAACACATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTCGTGGGTGATGCTGTCTTGGATCATCTTATCACCAGGCACTTGTTTTTCACTTACACAAATCTGCCACCGGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCACGTGTTGCAGTTAAACACAACCTTCATGTGCATCTCCGACATGGGTCCAGTGCCCTAGAGAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTTAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTCGAATCTATTGCAGGTGCCATTTTTCTTGACAGTGGAAGGGATACTTCTGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGAGAGCTGCAGGAGCGATGCCAACAGCAAGCTGAAGGCTTAGAGTATAAAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGAGCTGCTCAAAATCCACAGAAAAAAATGGCACAAAAATTAGCTGCCAGAAATGCTCTTGCTGCTTTGAAAGAAAAGGAGGTGGGGAAAACTCAGGAGAAGGATGATGAAAACGGGAAAAAGAATGGAAACCAGACATTTACAAGGCAAACATTAAATGATATCTGTTTACGAAGGAATTGGCCTATGCCATTCTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGATTTACATTTGCGGTGAGAGTCAATACTACTGATAGAGGATGGACCGATGAATGTATTGGAGAGCCAATGCCGAGTGTCAAGAAGGCCAAAGACTCAGCAGCCGTTCTTCTCTTAGAACTACTAAACAAATTATACTCGTGA 5853 0.4374 MEDGSRVPAGEDPSYWLDACEDISCDFIDFDVSSIVSEQPENPSNQDFFGGIDKILDSIKNGAGLPLNHGEPASNSNGTAEGAGEVWFPSNATLADGGNHHAPVPAPTDAAFDHSATVRNNGSSKVSNGNEGGILVNHPQERGVLNGGHEVDSEERCSKRARIGGYKNERPHYGRGNYQGKERERCFNNNRKRPWDRDEVDRRDRDGGGRKREHHGAVGRRDVRDRDWRDKEPRGYWERDKLGNNDMVFRPGAWEPDRNREEKMAIDVKENNGKLDKKSEEAKERVPEEKARQYQLDVLDQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNADIDDSENGAAQSLSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVETRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKTGCPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYAVKCENIGHSKDPFLIQVSNFAILFGNELDAEVLSMSMDLFIARTVTTKASLVFMGLINITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMFGDKSVDPMNQIDWRLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPSRDSMQTQKQINMTTNGKLMMADTSTKAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMISYPVQTSKILEALTTASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKTEKMDCHTDGYDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTLECARKPFNVPDSILRSVNFDTLEGALNINFKDKGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKDDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYS* 1951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04239 1950 MobiDBLite consensus disorder prediction 975 999 - -
Phac9g04239 1950 SMART helicmild6 727 813 IPR001650 -
Phac9g04239 1950 FunFam endoribonuclease Dicer homolog 1 1878 1947 - -
Phac9g04239 1950 SUPERFAMILY dsRNA-binding domain-like 1876 1946 - -
Phac9g04239 1950 CDD RIBOc 1629 1784 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 Gene3D - 285 529 IPR027417 -
Phac9g04239 1950 ProSiteProfiles Ribonuclease III family domain profile. 1412 1572 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 Pfam PAZ domain 1251 1389 IPR003100 GO:0005515
Phac9g04239 1950 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1872 1945 - -
Phac9g04239 1950 MobiDBLite consensus disorder prediction 1851 1871 - -
Phac9g04239 1950 Gene3D - 1785 1863 - -
Phac9g04239 1950 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 886 981 IPR005034 GO:0016891
Phac9g04239 1950 FunFam Endoribonuclease dicer-like 1 881 982 - -
Phac9g04239 1950 Pfam Ribonuclease III domain 1426 1572 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 Pfam Ribonuclease III domain 1648 1761 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 SUPERFAMILY RNase III domain-like 1612 1783 IPR036389 GO:0004525|GO:0006396
Phac9g04239 1950 MobiDBLite consensus disorder prediction 1851 1867 - -
Phac9g04239 1950 FunFam Endoribonuclease dicer-like 1 685 847 - -
Phac9g04239 1950 SUPERFAMILY RNase III domain-like 1385 1590 IPR036389 GO:0004525|GO:0006396
Phac9g04239 1950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 825 IPR027417 -
Phac9g04239 1950 Gene3D Ribonuclease III domain 1608 1782 IPR036389 GO:0004525|GO:0006396
Phac9g04239 1950 Gene3D Ribonuclease III domain 1390 1586 IPR036389 GO:0004525|GO:0006396
Phac9g04239 1950 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 475 IPR014001 -
Phac9g04239 1950 MobiDBLite consensus disorder prediction 136 226 - -
Phac9g04239 1950 CDD RIBOc 1408 1594 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 CDD SF2_C_dicer 691 821 - -
Phac9g04239 1950 Pfam Type III restriction enzyme, res subunit 297 457 IPR006935 GO:0003677|GO:0005524|GO:0016787
Phac9g04239 1950 SMART PAZ_2_a_3 1229 1393 IPR003100 GO:0005515
Phac9g04239 1950 SUPERFAMILY PAZ domain 1254 1369 IPR036085 GO:0005515
Phac9g04239 1950 FunFam Endoribonuclease dicer-like protein 286 526 - -
Phac9g04239 1950 Gene3D paz domain 1243 1367 - -
Phac9g04239 1950 MobiDBLite consensus disorder prediction 640 669 - -
Phac9g04239 1950 ProSiteProfiles PAZ domain profile. 1229 1369 IPR003100 GO:0005515
Phac9g04239 1950 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 858 IPR001650 -
Phac9g04239 1950 FunFam Endoribonuclease dicer-like protein 1391 1584 - -
Phac9g04239 1950 MobiDBLite consensus disorder prediction 145 226 - -
Phac9g04239 1950 Pfam Helicase conserved C-terminal domain 694 811 IPR001650 -
Phac9g04239 1950 ProSitePatterns Ribonuclease III family signature. 1648 1656 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1872 1947 IPR014720 -
Phac9g04239 1950 SUPERFAMILY dsRNA-binding domain-like 1743 1869 - -
Phac9g04239 1950 FunFam Endoribonuclease dicer-like 1 1608 1782 - -
Phac9g04239 1950 ProSiteProfiles Ribonuclease III family domain profile. 1613 1761 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 Gene3D - 1878 1948 - -
Phac9g04239 1950 Pfam Dicer dimerisation domain 886 974 - -
Phac9g04239 1950 CDD DSRM_DCL_plant 1878 1939 - -
Phac9g04239 1950 Gene3D Dicer dimerisation domain 881 982 IPR038248 -
Phac9g04239 1950 PANTHER DICER-RELATED 1241 1852 - -
Phac9g04239 1950 SMART ultradead3 287 490 IPR014001 -
Phac9g04239 1950 CDD DEXHc_dicer 290 489 - -
Phac9g04239 1950 SMART DRBM_3 1788 1849 IPR014720 -
Phac9g04239 1950 SMART DRBM_3 1873 1946 IPR014720 -
Phac9g04239 1950 FunFam Endoribonuclease Dicer 1 1249 1367 - -
Phac9g04239 1950 Gene3D - 684 850 IPR027417 -
Phac9g04239 1950 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1787 1850 IPR014720 -
Phac9g04239 1950 MobiDBLite consensus disorder prediction 972 999 - -
Phac9g04239 1950 SMART riboneu5 1408 1592 IPR000999 GO:0004525|GO:0006396
Phac9g04239 1950 SMART riboneu5 1628 1784 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04239 Phac-Chr9 39932081 39944260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04239 710 853 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 2.07e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04239 K11592 - gmx:100811631 3563.47