Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04223 ATGGCACCTAATGCCACTTTCTTTCTCTCACTCACATCTTCTTCCTTACCCTTTCCCTTATTCAACCACAATCTCCATACCCAATTCACATCTTCTCACAAACCATTCATTTCCTTTTCCAAGGCTACGACTTTCTCCTTCACCGCCTCGCCGGTCACGGTGGATAAAGCAAGGGTCGTTCCCGGAGGAAAACATGCGGAGAAAGAAGCGTTCAAGCAACCAAGACCAACTGAAGTCTACATCTGCAACCTTCCCAGAAGCTGTGACGTACAGCATCTACTTCACATGTTCAACCCCCATGGAACCGTACTTTCTGCTCAGGTTTCCCGGAGTGAGGAGAGTGGTGAGAGTAGAGGGAGTGCTTATGTGACAATGGCATCTATTGACTCCGCAAAAAAAGCAATTGATGCATTGGACGCATCGGATGTTGGTGGGCGTGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGGGATCTTGACACAATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAATTGTATGTTGGGAACCTTTCCAAGTTTACTATGCCTGAAGACCTGAGAGAGGTTTTTGGCAGATTTGGTAATGTGGCTAGTGTAAGGATGTTGCATGATATGAGACAAGGGAAACAAAGGGTCTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAGCGTGATGCAGCAATGTCTCTCCATGGAACGGTGCTTTGTGGTCGAACACTGGTGATTAGAGAGCGTGTAAAGAGAGAGGAATAA 783 0.4585 MAPNATFFLSLTSSSLPFPLFNHNLHTQFTSSHKPFISFSKATTFSFTASPVTVDKARVVPGGKHAEKEAFKQPRPTEVYICNLPRSCDVQHLLHMFNPHGTVLSAQVSRSEESGESRGSAYVTMASIDSAKKAIDALDASDVGGREVLVRFSAEMNPKRRDLDTMNSLPMRTIYYEGPHKLYVGNLSKFTMPEDLREVFGRFGNVASVRMLHDMRQGKQRVYAFVSYLSERERDAAMSLHGTVLCGRTLVIRERVKREE* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04223 260 SUPERFAMILY RNA-binding domain, RBD 71 161 IPR035979 GO:0003676
Phac9g04223 260 SMART rrm1_1 181 253 IPR000504 GO:0003723
Phac9g04223 260 SMART rrm1_1 78 151 IPR000504 GO:0003723
Phac9g04223 260 PANTHER OS02G0815200 PROTEIN 36 254 - -
Phac9g04223 260 SUPERFAMILY RNA-binding domain, RBD 175 258 IPR035979 GO:0003676
Phac9g04223 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 257 IPR000504 GO:0003723
Phac9g04223 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Phac9g04223 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 250 IPR000504 GO:0003723
Phac9g04223 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Phac9g04223 260 Gene3D - 162 260 IPR012677 -
Phac9g04223 260 Gene3D - 53 161 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04223 Phac-Chr9 39835543 39837185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04223 79 260 Eukaryotic Initiation Factors Gene Family AT3G16380 25.683 2.54e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04223 - - pvu:PHAVU_009G258000g 489.96