Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04216 ATGTCAGAAGGTGCAGAAATTGATGAGCGAGTGGACCTTGATGAGGAACATTTTATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGACGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAGGAACATGATGAATATGAGGATTCAACAGCAGAGGTTGGTGGGAAGGACCATTTACCTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGTGATGATGATCAAAAACCGTCTTTCATTGATGAAGATGAGAAAGAGAAGCATGACGAACTTCTCGCCCTTCCACCTCATGGTTCGGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGATTTGTGCGAGCCGGTGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTTGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCAATAGAAGAGATACATAGCAGGGAATTCAAGGGGAAAACATTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCTAAAACTTGGACGGAAGATGACTTTAGGAAAGTCATTGAAGGAGTTGGTCCTGGAGTTGAAAACATCGAGCTCATAAAGGACCCTCAAAATCCAAGTAGGAATCGTGGATTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCAAGCTTTAAGCTGGATGGCAATACCCCCACTGTCACATGGGCAGATCCTAAGAACTCTCCTGATCATTCTGCTTCTTCACAGGTAAAAGCTCTGTACGTCAAAAACATACCAGAGAATGTTTCCACTGACCAACTGAAGGAACTATTCCGTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACTGAGAAATATGAAATTGATGGACAACTACTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGATAAAAAACCGGATGGAGGGTATGGCTACAATCCTGGACTGCATTCAAACCATCTTCCTCATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGGTGGTGGTTATCAGCAGCCAATGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAAGCGCCACCTAGCAGACCTCGCAGAATTGATCGGAGTAATGGTCCAAGTGGGCAGCCAGGGAGAGGAGGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1452 0.4346 MSEGAEIDERVDLDEEHFMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHDEYEDSTAEVGGKDHLPEAEKSDIATEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRDLCEPVGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVSTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQLLEVVLAKPQADKKPDGGYGYNPGLHSNHLPHPAYGNFSGNPYGSLGAGYGVGGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSRPRRIDRSNGPSGQPGRGGGGSGNDEGNRSRRYRPY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04216 483 Gene3D - 8 187 IPR012677 -
Phac9g04216 483 SUPERFAMILY RNA-binding domain, RBD 104 271 IPR035979 GO:0003676
Phac9g04216 483 Gene3D - 188 268 IPR012677 -
Phac9g04216 483 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 470 - -
Phac9g04216 483 SUPERFAMILY RNA-binding domain, RBD 276 374 IPR035979 GO:0003676
Phac9g04216 483 SMART rrm1_1 188 265 IPR000504 GO:0003723
Phac9g04216 483 SMART rrm1_1 283 355 IPR000504 GO:0003723
Phac9g04216 483 SMART rrm1_1 108 181 IPR000504 GO:0003723
Phac9g04216 483 MobiDBLite consensus disorder prediction 8 55 - -
Phac9g04216 483 CDD RRM_SF 109 181 - -
Phac9g04216 483 Gene3D - 271 408 IPR012677 -
Phac9g04216 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 352 IPR000504 GO:0003723
Phac9g04216 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 255 IPR000504 GO:0003723
Phac9g04216 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Phac9g04216 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 269 IPR000504 GO:0003723
Phac9g04216 483 MobiDBLite consensus disorder prediction 56 87 - -
Phac9g04216 483 MobiDBLite consensus disorder prediction 1 87 - -
Phac9g04216 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Phac9g04216 483 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 187 - -
Phac9g04216 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 359 IPR000504 GO:0003723
Phac9g04216 483 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 188 268 - -
Phac9g04216 483 MobiDBLite consensus disorder prediction 439 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04216 Phac-Chr9 39763769 39767673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04216 109 413 Eukaryotic Initiation Factors Gene Family AT1G71770 26.453 3.21e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04216 K13161 - gmx:100790907 832.402