Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04135 ATGGCTCAAGAGGTAGGAGATGAAGCGACACCAGAATTCAAAGAGAGAAACCCAATCCATCAAGATTTCGATGACAAGACTTACAATCTCAGCGGAAAAATCATGCTCTCAGCGATCGTTCTACTCTTCTTCATCGTCATTTTAATGCTCTGTCTCCACATCTACGCGCGCTGGTACCTCAGACGCGCGCGCCGCCGTCAGCTCCGCCGCCACCGCGAGTTCCGCCGTACGCAGCTCATGTTCTCCAGCGCCGCTCCCACCACCGCCGCGGTCTCCCGCGGCCTCGACGCCGCTGTCCTCGCCTCGCTGCCCGTGTTCACTTACGACCCCAGGGCGCACCCGGAAAACGCGCCGGAATGCGCGGTCTGCTTGTCGGAGTTCGAACTGGGCGAACCGGGTCGGGTCTTACCGAAGTGTAACCACAGCTTCCACACGGAATGCATCGACATGTGGTTTCACTCGCACGCCACGTGTCCACTCTGTCGCGCACCGGTCGAGCGCACGGCTGAACCGGAAGTTGTTGTAACAGTAAACGAACCGGATTCCGGTTCGAGCGAGAACCGAACCGGTTCTACATCTTCTCCTTCCTCTTCGGTTGGTACGAGGAAATCTTCGTTGGTTGGTGTGACCGTTGAGGTGCCTCCGCGGGACGAGAATTTGCGTGACGAGAATTCGACGTCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTTACGAGGATTCTGAGCAGGGAACGGAGGGGGAACGTGTCGCCGGCGTCTTGCGGTGGTGATTGTAGCTCCGCCGCCCAGTGCGACGCGGAGCGAGGTGGGCGCGAGGAGACTCAGTGA 831 0.5897 MAQEVGDEATPEFKERNPIHQDFDDKTYNLSGKIMLSAIVLLFFIVILMLCLHIYARWYLRRARRRQLRRHREFRRTQLMFSSAAPTTAAVSRGLDAAVLASLPVFTYDPRAHPENAPECAVCLSEFELGEPGRVLPKCNHSFHTECIDMWFHSHATCPLCRAPVERTAEPEVVVTVNEPDSGSSENRTGSTSSPSSSVGTRKSSLVGVTVEVPPRDENLRDENSTSFRSPMSRMLSFTRILSRERRGNVSPASCGGDCSSAAQCDAERGGREETQ* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04135 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 170 IPR013083 -
Phac9g04135 276 MobiDBLite consensus disorder prediction 247 276 - -
Phac9g04135 276 CDD RING-H2_EL5-like 119 162 - -
Phac9g04135 276 MobiDBLite consensus disorder prediction 178 205 - -
Phac9g04135 276 MobiDBLite consensus disorder prediction 177 228 - -
Phac9g04135 276 FunFam E3 ubiquitin-protein ligase ATL6 83 168 - -
Phac9g04135 276 Pfam Ring finger domain 119 162 IPR001841 -
Phac9g04135 276 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Phac9g04135 276 SMART ring_2 120 161 IPR001841 -
Phac9g04135 276 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 169 IPR044675 -
Phac9g04135 276 SUPERFAMILY RING/U-box 102 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04135 Phac-Chr9 39257614 39259018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04135 26 273 Rapid Response to Elicitors AT3G16720 51.220 1.35e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04135 - - gmx:100791545 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g04135 9 39257614 39259018 Phac9g04135 9 39257614 39259018 ECH
Phac3g01622 3 18588974 18590176 Phac9g04135 9 39257614 39259018 PCT