Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04052 ATGGCCCCGTCCGAGGTTGATGTTGTTTCTTCCTCGTCCTTCGGTTGCGTTCTGAGGGACCGCAACAACCGCGAAGCATGCAGGGAAAGCAACGTGAAGGGCACGCATAATGATCATGCTACGTTACAAAGAAACATCAAGAACTTTGTCATGGACCTTAACACGTGCATGGGGGTGTCCTCTGTTTCCACAACAAACGAAAATGAAAACAACAACAACACCACCACCACCACTACCAGCAGCAGCAGCAAGAACAAAGGCGTTAACCAGCGTAAGGCTCCAAAAAATAACCGCCTAGAGAGACTTCGTTTCACACGAGCAAACTCCTTCAACAACGGCGGCAGCAGCAGCACCAACAACAAAGAGTCTTCCTTGGCCTTGTTGATCAGCCCGAGACACTCACGGCTTCTCGATCGATGGGCAGCTAGACAGGCTCGGGAGATGGTGTCGAATTTGGCGAATGAGGTTGAGTTGTTGTCAATGGATGAAGGTGACATGTTCCCAAGGACACCCAGTTCGTCTGAGGAAGAATCCACCTCCTCGGAGATCCCTAACATGGCTGCCTCTTCCCTTGTTCAGATATGGGAGAAGAGGCTGAAGCAATCTGTTGTCTCCAAAACGAACACATTGTCAGAGAAGATTGGTTCGAGCTCTTCTCCCACGAATGAGCATGTCAATGCTTCATTGCCCGAGGAAGAATGCTTTGATGGACCTTCAGGGAATGAAGAAAGTTCCTTTCCTGAGTGGGAATCAAGTGATCATTCTGTTTCGCCACATGCGAGGTCTGAGAGTGGTGTCAGTGTTGCTAGCCTCATAAAGAAACTCACTTCTACCGGGCAAAGTCAGAGTCCAACACCTTCTTTTCTTGATGATAATGAACATGAAGGGTATGCTAGTAGTAGTGTGACAAGTTCTCCTTGTAGAGAGCGTGAATGTGGTCAACAACAACAACCACCTTCAGACCATAAACTTGTTTGTCCCCTGCGAATTAGAGGGCGCCAAGCATTCAATGATTTGCTTATGCAGATGGAGAAGGACAGGCATAGGGAGCTCAACAACTTGGCAGAGCGTGGAGCAGTTTCTAAGTTCGCACAAAGAGGTCGCATTCAGGCATTGCTTCGGATTAAATTATTGCAACGTGACATGGCGGATAGTCATCGGTCCCACCAGAAATCAACATTATGTGAATTAAACAACAGACAAACACAAGGGTCTGCAATTATGCAACTAAGGGAAAGATTTACCAGCGGGGTTGAACTTAGAACTACTGTCCAGGCAGAAGTAGCTAACCCAAGAAGTCCTCAAAGAGAGGAAGTTAACAAAACCACTCAATTGGGTAACTCTGCCACCACTGATCAACTCAGAAAAGACACAAGAAACCAGAAAGCTCATGGCAGTGACAATCTCGCCACAAAATCCACACAAAAGTCAGTTTCACATACTAGAATAGATCATAATAATACAAAAGAAGCTTCTCCAAGTTCAGATGTCATGGTCCAAGAAACACATCCACGTTCAGATGCCAAGGCTCTACACAATACCTTAAAAGAAACTAGTGAGTGTGAGGCAACTACATCCATGATTGATTCAAGTATAAATGAGATGACAGACAGGGCAGAGGAGAGTAGCGAAAAGAATGGTATTACTAAAAGTAGTAATGATGAGACAGTGAATGAGAAAGATATTAGTAACCCACAGTATGCTGAATCCAGTTACAAGGAGAAAATAGAAGAGGCAATTGATCAGAACTATGCTGAAAGCAGTTATGGTGATGAGATGGAGGAAGAGGAAATTGACCAGAATTGTGATGATGAAACTAATTATGACTGGATCAGTGAAATTTCTAGGCCTAGGAGCTATTGGGAAGAGCGTAGGCAAGCCTGGTATAGAGAGATGCTTGAAACTGGTTCTCAAAATGAGGATATAAAGAGGCTTCTTGAAAGGAGAACAGTGTCAAGTTTCCTTTCCAGTGACTTCAGGGATAAAATGGATAGATTGATGGTATCTCATAGGGGAACACAATCACATTTAGTCAATAGTCAAGACCATGAGGAAAACAGCCAAGAATTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAACTTCTCAAGAAGAGGGAAGAGAAGCAACTGAGGAAGAAGAAGAAGAAGAGGAGAAGAGAAGTCACACAGAGGAAGAGGAAGAGGAGGATAATGCAGATGAGCATGAAGAGGAGAACGAGCATGAGGAGGAGAGCTTGATAAGTGATTCATATCATGAAGCTGCTGATCGTTCCTCATCATGGAGTTACAGGGACAATGAAGCCGGTGATGATTTTGATAGAGTTGTTTCTACATCTCCACAACCTTATCAATCTCAACCTTTCTATCAGGATAGTAGGCAATCTCCATCCACCAATCATCATTCAATGGAAATGGAACTCATATATGATTTGAGAGGGCACATGGAGCAACTCTATCACGAGATGTCTGAGCTAAGGAAAACAATAAAGGGATGCATGAATATGCAGATAGAATTACAACAAAACATGAAACATGAGGTTCACTCAGTTAAAAAAGAAGAAAAGAAGTGCCGTAACAGGACTCCAAAGAAAGGCAACTGCTGCATTTGCTATGAGGTGAAAGTTGACACGGTCTTGTACAGGTGTGGCCACATGTGTGCGTGTCTGAAGTGTGCCATAGAGTTGCAATGTAACAGTGGAAAATGTCCCATATGTCGGGCTAAAATAGTGGATGTTGTTCGAGTATATGTTGACGGTTAG 2766 0.4396 MAPSEVDVVSSSSFGCVLRDRNNREACRESNVKGTHNDHATLQRNIKNFVMDLNTCMGVSSVSTTNENENNNNTTTTTTSSSSKNKGVNQRKAPKNNRLERLRFTRANSFNNGGSSSTNNKESSLALLISPRHSRLLDRWAARQAREMVSNLANEVELLSMDEGDMFPRTPSSSEEESTSSEIPNMAASSLVQIWEKRLKQSVVSKTNTLSEKIGSSSSPTNEHVNASLPEEECFDGPSGNEESSFPEWESSDHSVSPHARSESGVSVASLIKKLTSTGQSQSPTPSFLDDNEHEGYASSSVTSSPCRERECGQQQQPPSDHKLVCPLRIRGRQAFNDLLMQMEKDRHRELNNLAERGAVSKFAQRGRIQALLRIKLLQRDMADSHRSHQKSTLCELNNRQTQGSAIMQLRERFTSGVELRTTVQAEVANPRSPQREEVNKTTQLGNSATTDQLRKDTRNQKAHGSDNLATKSTQKSVSHTRIDHNNTKEASPSSDVMVQETHPRSDAKALHNTLKETSECEATTSMIDSSINEMTDRAEESSEKNGITKSSNDETVNEKDISNPQYAESSYKEKIEEAIDQNYAESSYGDEMEEEEIDQNCDDETNYDWISEISRPRSYWEERRQAWYREMLETGSQNEDIKRLLERRTVSSFLSSDFRDKMDRLMVSHRGTQSHLVNSQDHEENSQELMAFLQERLHSARTSQEEGREATEEEEEEEEKRSHTEEEEEEDNADEHEEENEHEEESLISDSYHEAADRSSSWSYRDNEAGDDFDRVVSTSPQPYQSQPFYQDSRQSPSTNHHSMEMELIYDLRGHMEQLYHEMSELRKTIKGCMNMQIELQQNMKHEVHSVKKEEKKCRNRTPKKGNCCICYEVKVDTVLYRCGHMCACLKCAIELQCNSGKCPICRAKIVDVVRVYVDG* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04052 921 MobiDBLite consensus disorder prediction 61 92 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 276 323 - -
Phac9g04052 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 851 920 IPR013083 -
Phac9g04052 921 MobiDBLite consensus disorder prediction 534 567 - -
Phac9g04052 921 PANTHER BNAC05G24000D PROTEIN 1 920 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 710 746 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 779 801 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 534 548 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 209 226 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 424 454 - -
Phac9g04052 921 Coils Coil 701 747 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 209 264 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 244 264 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 276 321 - -
Phac9g04052 921 SUPERFAMILY RING/U-box 868 914 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 700 801 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 424 511 - -
Phac9g04052 921 CDD mRING-HC-C3HC5_NEU1 866 918 - -
Phac9g04052 921 Pfam Zinc finger, C3HC4 type (RING finger) 866 913 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 549 567 - -
Phac9g04052 921 ProSiteProfiles Zinc finger RING-type profile. 869 908 IPR001841 -
Phac9g04052 921 MobiDBLite consensus disorder prediction 103 122 - -
Phac9g04052 921 Coils Coil 142 162 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 61 122 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 163 184 - -
Phac9g04052 921 MobiDBLite consensus disorder prediction 760 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04052 Phac-Chr9 38747210 38752502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04052 869 917 C3H Transcription Factor Family AT3G06140 42.857 2.40e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04052 - - vun:114162588 1240.33