Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04019 ATGATAGGTGAAACTGAAGCTGAGAGTCCCTTAGGTGCAGCCAGTATGAGCCCTATCACAGCAGCCAAACCATGCACTCCATCTCCATCTGAACACAGCATCAATTTGATGGTTATTTTGGCAGCCATAGTGTGTGCTTTTCTTTGTGCTCTTGGTCTGAACACAATGCTGCAATGTGTGTTCCAATGTGCCAATCGTGTTCTCACTCAACCCTTTCAATGGATTGCCTCAAGGAGACTGAATTCTGGCCTGAAGAAGACAGAAGTGGTGGCTCTGCCAACCTCAACCTACACCCATTCTGGTGGCTCTCCATCTAACTGTGCCATTTGCTTATCAGAGTTCTCTGATGGGGACAACATAAGGTTCCTCCCAAACTGCAATCACCCTTTTCATGTTCATTGCATCGATAAGTGGCTGCTTTCTCACTCTTCTTGCCCAACTTGTAGGAACTTCCTCAAGTCTACTCATTCACTACACTCCTTGCATATTCTAGTATCATAG 501 0.4571 MIGETEAESPLGAASMSPITAAKPCTPSPSEHSINLMVILAAIVCAFLCALGLNTMLQCVFQCANRVLTQPFQWIASRRLNSGLKKTEVVALPTSTYTHSGGSPSNCAICLSEFSDGDNIRFLPNCNHPFHVHCIDKWLLSHSSCPTCRNFLKSTHSLHSLHILVS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04019 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 154 IPR013083 -
Phac9g04019 166 Pfam Ring finger domain 106 149 IPR001841 -
Phac9g04019 166 SUPERFAMILY RING/U-box 106 155 - -
Phac9g04019 166 CDD RING-H2_EL5-like 107 149 - -
Phac9g04019 166 SMART ring_2 107 148 IPR001841 -
Phac9g04019 166 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Phac9g04019 166 PANTHER RING-H2 FINGER PROTEIN ATL78 26 155 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04019 Phac-Chr9 38518905 38519612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04019 20 152 C3H Transcription Factor Family AT2G17450 43.151 2.00e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04019 - - gmx:100803003 236.113