Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g04008 ATGGTGAAGTTTCTGAAGACGAACAAAGCAGTGATAGTGCTGCAGGGGCGTTACGCGGGGAAGAAGGCGGTGATAGTGCGAACCTTCGATGAGGGCACGCGCGAGCGCCCGTACGGTCACTGTTTGGTTGCAGGGATAAAGAAGTACCCTAGCAAGGTCATAAAGAAGGACTCCGCCAAGAAGACCGCGAAGAAGTCGCGCGTGAAGGCCTTCATCAAGCTCGTCAACTACCAGCACTTGATGCCAACGCGCTACACGCTCGACGTGGACCTCAAGGACGCCGTCTCCCCCGACGTCCTCCACGCCAAGGATAAGAAGGTCACTGCCCTCAAGGAGACCAAGAAGCGCCTCGAGGATCGTTTCAAAACCGGCAAGAACCGGTGGTTCTTCACCAAGCTCAGGTTCTGA 408 0.5613 MVKFLKTNKAVIVLQGRYAGKKAVIVRTFDEGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFIKLVNYQHLMPTRYTLDVDLKDAVSPDVLHAKDKKVTALKETKKRLEDRFKTGKNRWFFTKLRF* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g04008 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Phac9g04008 135 Coils Coil 100 127 - -
Phac9g04008 135 SUPERFAMILY Translation proteins SH3-like domain 3 135 IPR008991 -
Phac9g04008 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Phac9g04008 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Phac9g04008 135 CDD KOW_RPL27 6 88 IPR041991 -
Phac9g04008 135 Gene3D - 1 135 IPR038655 -
Phac9g04008 135 FunFam 60S ribosomal protein L27 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g04008 Phac-Chr9 38461862 38462678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g04008 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 82.222 4.77e-80 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g04008 K02901 - gmx:100799485 251.521