Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03997 ATGGAGGAGAAAGAAAAAGGAGGGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTTTGGAGCAGAGATCAGAGATCCAAAAAAACCTACGGGAAGACAGTGGTTAGGAACATTTGACACAGCAGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCCATTGAATTGAGAGGTGGCCTTGCAATCCTTAATTTTCCTCATGCATCAGCATGTTCTTCAACTACAGCCATTGGAACTTCTTCTTCTTCTTCTTCTTCACAGCAGAAGGAAGTTATTGAGTTCGAGTGCTTGGATGATAAGGTGCTGGAAGACCTTCTTGAATCAGAAAAAATGGAGAAAGAGAGATCATCAGGAGAGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGACCATGGGGTAAGTTTGGAGCAGAGATTAGAGATCCAACAAAACCTACGGGAAGACAATGGTTGGGGACATTTGACACTGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCTATCCTTAATTTTCCCGATGAGTATTATTCTCATCTTCCTTTTGTATTCTCAAATTCTTCTACTAAGGACAATGGAACTTCTTTTGCTACGAAGGAAGTTATTGAGTTCGAATTGTTTCTGTTACCTGGGAAAAACCGAAGAACAAGAGGTAACAACATGGACGAGCCAGGTAAAGTTGAGAAGGAGAAGAGAGGGGAAGAAGGAAAGTACCGTGGTGTGAGAAGGAGGCCATGGGGTAAGTTTGGAGCAGAGATCAGAGACCCAACAAAAGCTACCGGAAGACAATGGTTGGGGACATTTGACACTGCAGAAGCAGCAGCAAGAGCTTATGATCGAGCAGCCATAGAATTAAGGGGTGCTCTTGCAATCCTTAATTTCCCTGAGGAGTACCATTCTCATCTCCCTTTCTTGTCATCATCTTCTTCTACTTCTTCTTCTAGTAGTGTCATTGGAAGTTCTTCTACTGCACAAGGGGAAGTGATTGAGTTTGAGTATTTGGATGATAAGGTATTGGAAGACCTTCTTGAGTTAGAGGAGAGGAGAAAGAAGAAAGAGTAA 1098 0.4362 MEEKEKGGEEVKYRGVRKRPWGKFGAEIRDPKKPTGRQWLGTFDTAEEAARAYDRAAIELRGGLAILNFPHASACSSTTAIGTSSSSSSSQQKEVIEFECLDDKVLEDLLESEKMEKERSSGEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFVFSNSSTKDNGTSFATKEVIEFELFLLPGKNRRTRGNNMDEPGKVEKEKRGEEGKYRGVRRRPWGKFGAEIRDPTKATGRQWLGTFDTAEAAARAYDRAAIELRGALAILNFPEEYHSHLPFLSSSSSTSSSSSVIGSSSTAQGEVIEFEYLDDKVLEDLLELEERRKKKE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03997 365 FunFam Ethylene-responsive transcription factor 2 249 308 - -
Phac9g03997 365 CDD AP2 249 308 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 SMART rav1_2 127 191 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 SMART rav1_2 249 313 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 ProSiteProfiles AP2/ERF domain profile. 249 307 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 PANTHER DNA-BINDING DOMAIN 234 358 IPR044808 GO:0003700|GO:0009873
Phac9g03997 365 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Phac9g03997 365 MobiDBLite consensus disorder prediction 316 335 - -
Phac9g03997 365 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Phac9g03997 365 FunFam Ethylene-responsive transcription factor 2 127 186 - -
Phac9g03997 365 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Phac9g03997 365 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 MobiDBLite consensus disorder prediction 227 250 - -
Phac9g03997 365 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Phac9g03997 365 SUPERFAMILY DNA-binding domain 127 187 IPR016177 GO:0003677
Phac9g03997 365 Gene3D AP2/ERF domain 248 308 IPR036955 GO:0003700|GO:0006355
Phac9g03997 365 Gene3D AP2/ERF domain 11 72 IPR036955 GO:0003700|GO:0006355
Phac9g03997 365 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Phac9g03997 365 MobiDBLite consensus disorder prediction 228 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03997 Phac-Chr9 38358673 38366639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03997 247 362 AP2-EREBP Transcription Factor Family AT3G23230 61.789 3.15e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phac9g03997 AP2 8.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03997 - - vra:106779050 181.8