LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g03997	ATGGAGGAGAAAGAAAAAGGAGGGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTTTGGAGCAGAGATCAGAGATCCAAAAAAACCTACGGGAAGACAGTGGTTAGGAACATTTGACACAGCAGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCCATTGAATTGAGAGGTGGCCTTGCAATCCTTAATTTTCCTCATGCATCAGCATGTTCTTCAACTACAGCCATTGGAACTTCTTCTTCTTCTTCTTCTTCACAGCAGAAGGAAGTTATTGAGTTCGAGTGCTTGGATGATAAGGTGCTGGAAGACCTTCTTGAATCAGAAAAAATGGAGAAAGAGAGATCATCAGGAGAGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGACCATGGGGTAAGTTTGGAGCAGAGATTAGAGATCCAACAAAACCTACGGGAAGACAATGGTTGGGGACATTTGACACTGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCTATCCTTAATTTTCCCGATGAGTATTATTCTCATCTTCCTTTTGTATTCTCAAATTCTTCTACTAAGGACAATGGAACTTCTTTTGCTACGAAGGAAGTTATTGAGTTCGAATTGTTTCTGTTACCTGGGAAAAACCGAAGAACAAGAGGTAACAACATGGACGAGCCAGGTAAAGTTGAGAAGGAGAAGAGAGGGGAAGAAGGAAAGTACCGTGGTGTGAGAAGGAGGCCATGGGGTAAGTTTGGAGCAGAGATCAGAGACCCAACAAAAGCTACCGGAAGACAATGGTTGGGGACATTTGACACTGCAGAAGCAGCAGCAAGAGCTTATGATCGAGCAGCCATAGAATTAAGGGGTGCTCTTGCAATCCTTAATTTCCCTGAGGAGTACCATTCTCATCTCCCTTTCTTGTCATCATCTTCTTCTACTTCTTCTTCTAGTAGTGTCATTGGAAGTTCTTCTACTGCACAAGGGGAAGTGATTGAGTTTGAGTATTTGGATGATAAGGTATTGGAAGACCTTCTTGAGTTAGAGGAGAGGAGAAAGAAGAAAGAGTAA	1098	0.4362	MEEKEKGGEEVKYRGVRKRPWGKFGAEIRDPKKPTGRQWLGTFDTAEEAARAYDRAAIELRGGLAILNFPHASACSSTTAIGTSSSSSSSQQKEVIEFECLDDKVLEDLLESEKMEKERSSGEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFVFSNSSTKDNGTSFATKEVIEFELFLLPGKNRRTRGNNMDEPGKVEKEKRGEEGKYRGVRRRPWGKFGAEIRDPTKATGRQWLGTFDTAEAAARAYDRAAIELRGALAILNFPEEYHSHLPFLSSSSSTSSSSSVIGSSSTAQGEVIEFEYLDDKVLEDLLELEERRKKKE*	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac9g03997	365	FunFam	Ethylene-responsive transcription factor 2	249	308	-	-
Phac9g03997	365	CDD	AP2	249	308	IPR001471	GO:0003700\|GO:0006355
Phac9g03997	365	SMART	rav1_2	127	191	IPR001471	GO:0003700\|GO:0006355
Phac9g03997	365	SMART	rav1_2	249	313	IPR001471	GO:0003700\|GO:0006355
Phac9g03997	365	SMART	rav1_2	12	76	IPR001471	GO:0003700\|GO:0006355
Phac9g03997	365	PRINTS	Ethylene responsive element binding protein signature	13	24	IPR001471	GO:0003700\|GO:0006355
Phac9g03997	365	PRINTS	Ethylene responsive element binding protein signature	36	52	IPR001471	GO:0003700\|GO:0006355
Phac9g03997	365	ProSiteProfiles	AP2/ERF domain profile.	249	307	IPR001471	GO:0003700\|GO:0006355
Phac9g03997	365	PANTHER	DNA-BINDING DOMAIN	234	358	IPR044808	GO:0003700\|GO:0009873
Phac9g03997	365	SUPERFAMILY	DNA-binding domain	249	308	IPR016177	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g03997	Phac-Chr9	38358673	38366639	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g03997	247	362	AP2-EREBP Transcription Factor Family	AT3G23230	61.789	3.15e-40	137

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Phac9g03997		AP2	8.8e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g03997	-		-	vra:106779050	181.8

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