Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03904 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTATAAAATCCTGTTGCTCAAAGGAACAGATTAAGTCCAAGCTATTATCATCAAAATTAAAAACAAGTAGCGCAAAACACCGAAAAAAGGAACACAAAGAGAAGTCAAGATCTCATAAATACAGAGTTGGTACGAACAGATCAAAGAAAAGAGTTGTTGATTCTTCTATCAAGGCACCACTTGAGGACTCTTCAAATAAAAAAGTGATTATTCGAAAAACTCTCCATAAAACTGATGGGAACTCTTCACGGATGGTGTCTTCAACAAAGCTACAAGGAAGAAAAAATCCTCATAGTTCTAGAAAAGAGGGCCATGGTGTTGATGAGGAGGCAAAAATTAAAAAACGTAAGAGCAGCAAAAAGAAGAATAGTCAAAGGGACAACATGGATCATGACGATGCTTCACGCCTTAAAAGGAGAACAAGATACCTCTTAATCAAAATGAAGTTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCGGAAAAGGAGTTACTAAGAGCAAAAAAGCAGATTTTAAATTGTAAACTTAGTATTCGAGATGTTATACGCCAACTGGATTCTCTTAGCTCTGTGGGTAGTATTGAAGATTCTGTCATTGCTCCAGACGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATAATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGATATTGCATTACTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAACCCAGAGAGGAAAGAAGACAGCCACAGCATCAATACAGAAGGTGCTGATGAAAATTCATCCAATGATTCAACAAGTTCTTCGAGTTTGTGGCCTTTGAATGGAGAATGTCCTCCAGTAGATGAAGACCTTAGTCATGAATATTATTCTGTGAATAGTTTCATTGATTCTGATGAATCTGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCCGTTGACTACAAGAAACTGTACGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACTCTGCATGAAAGTGAAAATAAATATCCCAATAATGAGAGCAATGATAGAATAAGAGAGGGTTCTTCAGGCTTACAAATAAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGGTATCACTTGTGGCAATTCCTGTAGTCATCTTTCTTAATTCTCATTAA 1557 0.386 MRDAENLNKKGSIKSCCSKEQIKSKLLSSKLKTSSAKHRKKEHKEKSRSHKYRVGTNRSKKRVVDSSIKAPLEDSSNKKVIIRKTLHKTDGNSSRMVSSTKLQGRKNPHSSRKEGHGVDEEAKIKKRKSSKKKNSQRDNMDHDDASRLKRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILNCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKMEIIESTNAHLGTQFSLDSSWQDVFKEEAAMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDSHSINTEGADENSSNDSTSSSSLWPLNGECPPVDEDLSHEYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYPNNESNDRIREGSSGLQIRRSCFRIPLDAVEVSLVAIPVVIFLNSH* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03904 518 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Phac9g03904 518 SUPERFAMILY FYVE/PHD zinc finger 227 293 IPR011011 -
Phac9g03904 518 MobiDBLite consensus disorder prediction 359 378 - -
Phac9g03904 518 Pfam PHD-finger 235 290 IPR019787 -
Phac9g03904 518 MobiDBLite consensus disorder prediction 332 346 - -
Phac9g03904 518 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Phac9g03904 518 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 22 503 - -
Phac9g03904 518 MobiDBLite consensus disorder prediction 32 57 - -
Phac9g03904 518 SMART PHD_3 235 288 IPR001965 -
Phac9g03904 518 CDD PHD_PRHA_like 235 287 IPR045876 -
Phac9g03904 518 MobiDBLite consensus disorder prediction 25 146 - -
Phac9g03904 518 MobiDBLite consensus disorder prediction 432 460 - -
Phac9g03904 518 MobiDBLite consensus disorder prediction 91 105 - -
Phac9g03904 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Phac9g03904 518 MobiDBLite consensus disorder prediction 107 126 - -
Phac9g03904 518 MobiDBLite consensus disorder prediction 329 382 - -
Phac9g03904 518 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Phac9g03904 518 MobiDBLite consensus disorder prediction 432 484 - -
Phac9g03904 518 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03904 Phac-Chr9 37702494 37708806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03904 136 503 Homeobox Transcription Factor Family AT4G29940 57.294 2.72e-130 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g03904 PHD 5.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03904 - - gmx:100816912 827.78