Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03900 ATGATATGCCTTGACTTGAGGTGGCTAGATGTTGCGTTTGATATCCTTTATTTTGGAGATACCAGTGTGATTCACCAAACTTTAAAGGAACGACATGAGATTTTATGTAAAGTTGTTAGGCCAATGAAGGGACGATTGGAAATTTTGGTACCTAATGCTGGTATCAACAGTCATGTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAATATTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAAGACCGCAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACATGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCCATCTCCAAATGAACAACCTAAGCGGTTTATATCCTTTTGCAGAGTTGGCACTGGACTCTCTGCTGAGGAGCTTGATGTTGTAGTGACCAAACTGAAACCGTACTTCAGAAAGTATGAATATCCAAACAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAGTTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGTCTTGATGTTCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGATTGTTATGAACAAAAGAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTTTCTGAACTGACAAAGAAGAAGTTACGAGAAGAAATTGACGAGTTCTCAGATTCTTTCTACTTGGACCTCGATCTTGAAGACATCAAGCAGCTCTTAAGCAACATTCATAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAATACCTTCACTGAAAGGAGATTGGCATTTTATATTACAACTTGCTTTGAGGAGATTCAAGCTTGACGTTCTTATGGGTGGTGGAAAAGTTACCTCTAATCTTACCTGTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCGGACTGACTCTGAACAAATACTGAATAGTTTTACTTCAGTAGAAAGAAAATTTCTCCAAAGCAAGAGGTTGCATGTAGTTAAATCCCAATGGTTGGAAGATTGTTTAGACAGTAGCAAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCTTGGGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACAGGACTTGGCGTTAGAGGCTCATCTGAGTGGAGATAATGCAGAAGACCAAAACACATCTTTCTCTGACAAGGGAAATCGGCAAAGTGAAAAAGTTGCATGCGAAGACAATTCGGCCTTGTTATCCGAAGAGAAGGGTATCAAAAGGAAACGAGGAAGACCTGCGGGCAGTGGTATAAAAATTGTAAAACCAGCTGCCAAACAAACTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTGCTAAAATATGTGAATATGAATCACCAGATGAAAGTGGTTCTCGTGACAAGAGGCCAATTGAGAAGGAGATTGACACTAGAGCAGGAAGTCTTAACTTTTACAAGAAACACTCAGAACGCCAGGAGAACGAGGAACGGGAAAATGTCCATGTTTCTGGGACAGTGGAAAGTTCTGAACAAAATAAGGTAGAGAAGCTAGAGGACTTGAAGGAGAATGAACATGAAAGAATGTTGATTCCTGAAATAGAAATGATTGATAGGCACAACAATGACCAAAACAATGAGGTGATTGAGAAATTAGAATTTTGTGCTGACCCCCTGCAGGCGATGCTATTTGACATGATTCCTAGTCTTGGCACCCAAAAAGTTGAGCAACCTATGAATCTTAGTGTTAGAGAAGAGAAGGTACCAGAAACCTCCAATGCAGCAACAGAGCCTACAACTACAAAGAAAAATAAGGTTAGCTTTATGGATGCTGCCAATGACCTGCTGAAGGACTGGTAA 2259 0.4033 MICLDLRWLDVAFDILYFGDTSVIHQTLKERHEILCKVVRPMKGRLEILVPNAGINSHVTSGEPCWSFIAHNIDEVERFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRHGGQVAQFLVGLAERPSPNEQPKRFISFCRVGTGLSAEELDVVVTKLKPYFRKYEYPNKRPPSFYQVTNHSKERPDVWVDSPEKSVILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKLREEIDEFSDSFYLDLDLEDIKQLLSNIHKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPSLKGDWHFILQLALRRFKLDVLMGGGKVTSNLTCATHLVAFLVPGCRTDSEQILNSFTSVERKFLQSKRLHVVKSQWLEDCLDSSKRLPEDSYSLKPWGIEESTAEDCEQDLALEAHLSGDNAEDQNTSFSDKGNRQSEKVACEDNSALLSEEKGIKRKRGRPAGSGIKIVKPAAKQTRRARPQNVKKPAKICEYESPDESGSRDKRPIEKEIDTRAGSLNFYKKHSERQENEERENVHVSGTVESSEQNKVEKLEDLKENEHERMLIPEIEMIDRHNNDQNNEVIEKLEFCADPLQAMLFDMIPSLGTQKVEQPMNLSVREEKVPETSNAATEPTTTKKNKVSFMDAANDLLKDW* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03900 752 MobiDBLite consensus disorder prediction 719 739 - -
Phac9g03900 752 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 11 114 - -
Phac9g03900 752 Gene3D DNA ligase/mRNA capping enzyme 5 115 - -
Phac9g03900 752 MobiDBLite consensus disorder prediction 515 538 - -
Phac9g03900 752 MobiDBLite consensus disorder prediction 716 739 - -
Phac9g03900 752 CDD OBF_DNA_ligase_IV 120 264 - -
Phac9g03900 752 ProSitePatterns ATP-dependent DNA ligase signature 2. 89 113 IPR016059 GO:0003909
Phac9g03900 752 Pfam ATP dependent DNA ligase C terminal region 138 256 IPR012309 GO:0003910|GO:0006281|GO:0006310
Phac9g03900 752 PANTHER DNA LIGASE 4 10 285 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Phac9g03900 752 MobiDBLite consensus disorder prediction 589 646 - -
Phac9g03900 752 Pfam ATP dependent DNA ligase domain 11 113 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac9g03900 752 ProSiteProfiles ATP-dependent DNA ligase family profile. 12 150 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac9g03900 752 ProSiteProfiles BRCT domain profile. 421 491 IPR001357 -
Phac9g03900 752 Coils Coil 640 661 - -
Phac9g03900 752 FunFam DNA ligase 116 277 - -
Phac9g03900 752 FunFam DNA ligase 380 491 - -
Phac9g03900 752 SUPERFAMILY BRCT domain 373 493 IPR036420 -
Phac9g03900 752 Gene3D BRCT domain 379 491 IPR036420 -
Phac9g03900 752 Gene3D BRCT domain 278 362 IPR036420 -
Phac9g03900 752 Gene3D - 116 277 IPR012340 -
Phac9g03900 752 MobiDBLite consensus disorder prediction 589 637 - -
Phac9g03900 752 SUPERFAMILY Nucleic acid-binding proteins 121 272 IPR012340 -
Phac9g03900 752 MobiDBLite consensus disorder prediction 517 538 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03900 12 273 Core DNA Replication Machinery Family AT1G08130 28.519 2.52e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03900 K10777 - gmx:100816002 743.421