Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03899 ATGGAGAATATTGGTGATGAGTACAAGCATTACTGGGAGACCACCATGTTCCTCCAGACCCAAGAGCTTGACAGTAGTTGGGGGTTCGATGAGGCTTTATCAGGGTACTACGATTCCAGCTCCCCTGATGGGGCTGCTTCATCTGCAGCTTCTAAGAACATTGTTTCCGAGAGGAATAGAAGGAAGAAGCTCAATGAAAGGCTTTTCGCGCTTAGATCGGTGGTTCCTAATATCAGCAAGATGGATAAGGCTTCTATTATTAAGGATGCTATTGAATACATCCAGGAATTGCACGAGAAAGAGAAGATGATCCAAGCTGAGATAATGGATCTTGAATCTGGGATGCCAAAAAAGAGTAGTTCAAGCTATGATTTTGAGCAGGAACAGCTTCCTGCGGTGCTGAGGTCCAAGAAGAAGAGAACCGAGCAGATATACGATTCAGTCAGTTCAAGAAACACCCCAATTGAAGTCCTTGATCTGAGCGTTACCTACATGGGGGAGAAAACTGCTGTGGTGAGTTTGACATGTAGCAAAAGAACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTGAAGATCATCACTGCCAACATCACTTCGTTTTCAGGGAAGCTTCAGAAAACAGTCTTCATCGAGGCCAATGAAGAAGAGAAATATCATTTGGAGATAAAGATTCAGACAGCCATTGCAGCTCTTAACGAACCTCTAAGTCCCATGAGCATTTAA 738 0.439 MENIGDEYKHYWETTMFLQTQELDSSWGFDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQELHEKEKMIQAEIMDLESGMPKKSSSSYDFEQEQLPAVLRSKKKRTEQIYDSVSSRNTPIEVLDLSVTYMGEKTAVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGKLQKTVFIEANEEEKYHLEIKIQTAIAALNEPLSPMSI* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03899 245 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Phac9g03899 245 SMART finulus 54 103 IPR011598 GO:0046983
Phac9g03899 245 Gene3D - 45 113 IPR036638 GO:0046983
Phac9g03899 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 113 IPR036638 GO:0046983
Phac9g03899 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 44 228 - -
Phac9g03899 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Phac9g03899 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03899 Phac-Chr9 37651452 37658773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03899 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.384 9.22e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g03899 HLH 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03899 - - vun:114163278 444.506