Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03836 ATGATGAACATGCTTGTGCCTTATTCTTCTCAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAACATGTCCCAGGTTGACATTCAAACAGCACTGAGGAGTTTGTTTCCTGGAGATTTTTCTGGTGGACAGGCCCAGAATATTGATCAAAACCCTCCCACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCAGTTCTCAACCCCACTTTCCTGAGACACTTGGAGGAGCAACAATGTCCCCAATGCCAAACACAGCCATTCAAGCATTGGCACAAGGCCCTCTAACAACACAAAGTGAACATGATGCAATGATGAGAGCAATGCTCCATGTTATATCTCCAACTTCTCATCACCACCAAAACTTCCATCCAGACACCAGTGCTTTCCAGAGTTACAGATCAGACATTGCTCCCAACATGGCTCCCAATATCAGAAGGCAAAGCCTCATGAAGAGATCTTTTGCATTCTTTGGAAACTTAAATTTTATGAGAATTAGAGAACGCATTCAAGCAACGTCCCGTCCCACAAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTCAGAGCACTACTTCCTCCAGGAACTAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGTTCTCTAATGGCTGAAGTTGATGAACTAAGCAAAAGGAATGAGGGATTGACATCACTTTTGCCATCCAAAGAACCTACAACTGAAGAAACCAGGGTTAGATTATCTCCAAGTGAAAGACTAGGTGTCCGAGTTTCACATGTACCCGAATCAAGCTCGTCACAGGATCGAATGGTGGAGTTGCAAGTGAATGTGAGAGGACAAGTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCTTAAAACGGTGTCTCAACGTGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCACAAGGGAATAATGATCTTCATCAACTAACCTTCAGATTAAGGATTATTCAGGGAAGTGAATGGGACGAGTGTGGGTTCGAGGAAGCAGTGAGAAGAGTGGTTGGTGAGTTGGCACAGTACAAAGAGGACCAATAG 1170 0.4299 MMNMLVPYSSQTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGDFSGGQAQNIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGSSQPHFPETLGGATMSPMPNTAIQALAQGPLTTQSEHDAMMRAMLHVISPTSHHHQNFHPDTSAFQSYRSDIAPNMAPNIRRQSLMKRSFAFFGNLNFMRIRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSSLMAEVDELSKRNEGLTSLLPSKEPTTEETRVRLSPSERLGVRVSHVPESSSSQDRMVELQVNVRGQVSQIDLSICLLEFLKRCLNVSLVSMDANTHIAQGNNDLHQLTFRLRIIQGSEWDECGFEEAVRRVVGELAQYKEDQ* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03836 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 263 IPR036638 GO:0046983
Phac9g03836 389 CDD bHLH_AtbHLH_like 204 256 IPR045239 -
Phac9g03836 389 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 39 379 IPR044658 -
Phac9g03836 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Phac9g03836 389 MobiDBLite consensus disorder prediction 49 72 - -
Phac9g03836 389 Pfam Helix-loop-helix DNA-binding domain 203 248 IPR011598 GO:0046983
Phac9g03836 389 Coils Coil 238 265 - -
Phac9g03836 389 Gene3D - 198 271 IPR036638 GO:0046983
Phac9g03836 389 SMART finulus 205 254 IPR011598 GO:0046983
Phac9g03836 389 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03836 Phac-Chr9 37101756 37107140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03836 11 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.505 8.23e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g03836 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03836 - - gmx:100807098 555.058