Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03789 ATGGACAGTGCCGGCCACTACAATCCCCGCACGGTGGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGAACTGGCATGATCAAAGCCCTCACCACTGATGTTGAGGAGTTTTACCAGCAGTGCGATCCTGAAAAGGAGAATCTATGTCTATATGGATTCCCCAATGAACAATGGGAAGTTAATTTGCCAGCTGAAGAAGTTCCTCCAGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGTTACAATCAGTGGCTTTTTACTTTGGAGCAAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCTACAATATTCGAGGTTGTAACTGGATCTGCAATGAAACAGGCAAAGGAGAAGTCATCAGACCGCAACAGCAGCAAATCAAAGTCCAATTCAAAAGGGCGAGGATCTGAATCTGTGAAGTATGTAAAGCAAGAAATGAAGGAGGAAGAGGAGGTATTGGACGAAGCAGAAGAGGAGGAGCACGGGGAGACCTTGTGTGGTGCTTGTGGGGAGAACTATGCATCCGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCTCGGGCTGAGCACATCAAGCACTACAAGTGTCCCTCATGCAGCAACAAGAGAGCAAAACCTTGA 750 0.4667 MDSAGHYNPRTVEEVFRDFKGRRTGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAMKQAKEKSSDRNSSKSKSNSKGRGSESVKYVKQEMKEEEEVLDEAEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAKP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03789 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Phac9g03789 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Phac9g03789 249 PANTHER CPG BINDING PROTEIN 8 248 IPR045104 GO:0006355|GO:0042393
Phac9g03789 249 CDD PHD_AL_plant 195 245 IPR044104 -
Phac9g03789 249 SMART PHD_3 195 243 IPR001965 -
Phac9g03789 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Phac9g03789 249 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Phac9g03789 249 MobiDBLite consensus disorder prediction 144 171 - -
Phac9g03789 249 FunFam PHD finger alfin-like protein 188 244 - -
Phac9g03789 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Phac9g03789 249 Coils Coil 169 189 - -
Phac9g03789 249 Pfam PHD-finger 196 245 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03789 Phac-Chr9 36842295 36850743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03789 4 248 Alfin-like Transcription Factor Family AT3G42790 75.102 6.76e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac9g03789 Alfin 9.6e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03789 K26274 - gmx:100170699 429.483