Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03781 ATGTCGGTGAATCTGACAGAAAACGCGATTCCGGCGATAATCGGCGGCGACGTGAACGCCAAACCGCTTGTTCAGGTTCTGGACGTAGAGTTAGTCGCCAATACCAACAACTCGCAGAAGCAGAGATACCGTCTTCTGCTTTCCGACGCCGTTTTGTCTCACCACGCGATGCTCGCCATTCAGCTCAACGATCGAGTCCGAACCGGTCAAGTTCGGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCTCTCCTTTCAAGAACCGCAAGATTATCATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAGATCATTGGGAATCCGAAGCCATGCGTGGATTCAGATTTACCAAGTGTGAGAGCTTTAGCTGATAACACTGTGGCCAGGAGTAATAGTAGTAGTGATAATATTAGTAATTCTGCTGCTCGAAATGCAAGTCATGATAACGCCCAGAATTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCAGTTTACAAAGGCCGTGGGGCAGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAGGGCAAGGGTAACTGCTAAAGGGGATCTGCGCCGCTACAATAATGCACGCGGTGATGGAAAAGTCTTCTCATTTGATCTCCTCGATTCTGATGGAGGCGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGCTTCTATAGTGTAATTGAGGTTGGTAAAGTTTACATGATATCAAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAACCATCTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTAGAGCTGTGCCCAGATGAGGATGATTCTATACCTAGACAGCAGTTCTCCTTCCGGCCTATCAGTGACATTGAGAATGTTGACAATAACGCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGAGAATTTTGCAACAGGGAAGGGCAACAGTTGCAAGAGATGGTAGATGCCGGAATTTCCCCTATTTTAGCAGTCAAAGCGGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAATAGCTTAAGAGAATGGTTTGATCTAGTAGGAAAAGATTCTGCTTCCGTTTCAATTTCTAAGGACGTTATTCCTGGAGGAACAAAGAATGAGGTTCGCAAAACTATATCCCAAATCAAGGATGAAGGTCTGGGACGGTCAGACAAGCCAGACTGGATAACAATAAGGGCAACCATATCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGTGATCGACAATGCAATAAGAAAGTGACTAGGTCAGGAAACTCAAGATGGCAATGTGATAGATGCAATCAGGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTAGATGGCACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGTGAGGAGATTATGGAGTATTCAGCGAAAGATCTGTACTTGTTGAAACATGAACAACAGGATGATGAGAGCTTTGGAGAAATAATCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGACTGAAAATCAAAGAGGAACTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTTAAATATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGCAGTGA 1896 0.4304 MSVNLTENAIPAIIGGDVNAKPLVQVLDVELVANTNNSQKQRYRLLLSDAVLSHHAMLAIQLNDRVRTGQVRKGSVVQLLDYICSPFKNRKIIMVLNMETIIADFEIIGNPKPCVDSDLPSVRALADNTVARSNSSSDNISNSAARNASHDNAQNFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIRARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYSVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNAILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQQLQEMVDAGISPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEANSLREWFDLVGKDSASVSISKDVIPGGTKNEVRKTISQIKDEGLGRSDKPDWITIRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFEECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDESFGEIIKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVKYSSESQYMLDSISKFCRQ* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03781 631 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Phac9g03781 631 SUPERFAMILY Nucleic acid-binding proteins 184 298 IPR012340 -
Phac9g03781 631 CDD RPA1_DBD_B 319 426 - -
Phac9g03781 631 FunFam Replication protein A subunit 4 115 - -
Phac9g03781 631 Gene3D - 3 115 IPR012340 -
Phac9g03781 631 Gene3D - 438 629 IPR012340 -
Phac9g03781 631 Pfam Replication protein A OB domain 308 412 IPR031657 -
Phac9g03781 631 FunFam Replication protein A subunit 297 435 - -
Phac9g03781 631 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Phac9g03781 631 NCBIfam replication factor-a protein 1 (rpa1) 4 627 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phac9g03781 631 MobiDBLite consensus disorder prediction 130 159 - -
Phac9g03781 631 Gene3D - 297 435 IPR012340 -
Phac9g03781 631 Pfam OB-fold nucleic acid binding domain 199 282 IPR004365 GO:0003676
Phac9g03781 631 MobiDBLite consensus disorder prediction 130 172 - -
Phac9g03781 631 SUPERFAMILY Nucleic acid-binding proteins 451 628 IPR012340 -
Phac9g03781 631 PANTHER REPLICATION FACTOR A 1, RFA1 198 606 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phac9g03781 631 FunFam Replication protein A subunit 184 293 - -
Phac9g03781 631 FunFam Replication protein A subunit 436 628 - -
Phac9g03781 631 SUPERFAMILY Nucleic acid-binding proteins 302 429 IPR012340 -
Phac9g03781 631 Pfam Replication factor-A C terminal domain 470 621 IPR013955 -
Phac9g03781 631 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Phac9g03781 631 Gene3D - 184 294 IPR012340 -
Phac9g03781 631 CDD RPA1_DBD_A 187 290 - -
Phac9g03781 631 CDD RPA1_DBD_C 454 627 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03781 Phac-Chr9 36766972 36770734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03781 26 623 Core DNA Replication Machinery Family AT2G06510 68.720 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03781 K07466 - gmx:100792409 1095.11