Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03746 ATGCAGAAAAAGTCGACATTGCCACTGAGCGACGCGAATGCGAACAGGAAGAAGAAGGAACTGCGCAGCAAGGAAACGTTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTTAGGGGCATGCAATTGGACGCTATTCAGTCGGTGCTCTCAGGAAAGGATTGTTTTTGCCTTATGCCAACTGGGGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAAACAGGAATTGTGCTTGTTGTATGTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTGAAGGAAAAAGGGATTGCAGCAGATTTTCTCTCCTCAACAAAAACCGCGGATGCTAAAGTAAAGATTCACGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCAGGGTTTATGTCAAAGCTGACCAAGATTTATACTAGGGGTCTGCTAACTCTCATTGCCATAGATGAGGCGCATTGCATCTCAAGTTGGGGACATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTTTGACTGCTACTGCTGCGCCAAAGGTTCAGAGGGATGTAGTTGAATCCTTGCGGATGCAAAATCCATTAATACTCAAGTCTTCATTTAACCGTCCAAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTTTGCTGATTTATCTAATACACTCAAATCTCTTGGAGATGTCTGTGCAATAGTGTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAAGTAATCTATCCCAAAGTGGCATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACGTCGGTATTAGATGATTGGATTTCTTCTAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCATTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAGGAGTCTGGCAGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGGTAGATGATTGCAAAAGAATGAAATTTATATTAAGTAAATCGGGGAGCAAGAACTCACAGTCATCTAGTTCACAAGAAGAATCATCCAAAATATCCCTTATTGCTTTCAATCAGATGGTTGAATACTGTGAAGGATCTGGATGCCGCAGGAAAAGGATTCTCGAGAGTTTTGGGGAACAGGTAACTGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATGCAAACTTAGTTGCCAGATGTTTGGAGGATCTCAAAACTGTTTATGCTCTATGCCGTAAAAATGGTTCTTCTCGAGTTTTTATAACCAGTTCCACCAGCGCAATTGATGGAGAACAGTTATCTGAATTCTGGAATCGGGGAGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGAAGATGGTAATGAGGTTGTCAACAACCTAACCAGGTCAAAGCTTCAATCCAGATTGGGAGTAAATGAAAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATAAAAATAATAACAGTTATAAACAGAGCAACAAAGTTGACAAGAATGCTATTTCTGATCCAATGCGAGGAGCAAGCAGGCAAAGGTTACAAAATGCTCTTAAACAGGTTCAGCAACGGCTTGACAACTTCAAGATTGAAGTGGATACGTCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAATATGGCAAGGCTGGCAAATCATTCTATTATTCGCAAGTGGCAAGTACTGTAAGATGGCTGACGACTGCTAGCTCCAGCGAATTGATGAACCGACTTCGTTCAATTAATGCTTCTCCCTCAACTAGTGTCGTGTCTGAAGCTAAACAGTCCCTTACACCAGCTGAACAGCCCTTCAAATCGCCACCTGCTCTAGATCCTTGTGCCGAAGATACCAGCAATGAATACTCTGGCAATGCTAGATCAGAAACTTCTCCATGTATTGTGCCAATGGAAAGCTGTTCGTTTAATAATACCAACTTGCCACAAATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAACAAAAGGGGACCAGTTAAATGACACAAAGAAGCATTCAAGAGTCGAAAAGAAGATGAGGATGCAGTAA 2199 0.4129 MQKKSTLPLSDANANRKKKELRSKETLVKLLRWHFGYPDFRGMQLDAIQSVLSGKDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKEKGIAADFLSSTKTADAKVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLTKIYTRGLLTLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAAPKVQRDVVESLRMQNPLILKSSFNRPNIYYEVRYKDLLDDAFADLSNTLKSLGDVCAIVYCLERSMCDDLSSNLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGVDDCKRMKFILSKSGSKNSQSSSSQEESSKISLIAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDACRHANLVARCLEDLKTVYALCRKNGSSRVFITSSTSAIDGEQLSEFWNRGEEASGSEEDISDSEDGNEVVNNLTRSKLQSRLGVNEKLAMLQRAEENFYKNNNSYKQSNKVDKNAISDPMRGASRQRLQNALKQVQQRLDNFKIEVDTSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTASSSELMNRLRSINASPSTSVVSEAKQSLTPAEQPFKSPPALDPCAEDTSNEYSGNARSETSPCIVPMESCSFNNTNLPQIPSFSEFVNSRKTKGDQLNDTKKHSRVEKKMRMQ* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03746 732 CDD DEXHc_RecQ 29 229 - -
Phac9g03746 732 SMART helicmild6 273 354 IPR001650 -
Phac9g03746 732 Gene3D - 230 456 IPR027417 -
Phac9g03746 732 SMART ultradead3 36 238 IPR014001 -
Phac9g03746 732 Coils Coil 561 581 - -
Phac9g03746 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 394 IPR001650 -
Phac9g03746 732 FunFam ATP-dependent DNA helicase 21 229 - -
Phac9g03746 732 Pfam Helicase conserved C-terminal domain 253 352 IPR001650 -
Phac9g03746 732 NCBIfam RecQ family ATP-dependent DNA helicase 30 442 IPR004589 GO:0004386|GO:0006310
Phac9g03746 732 MobiDBLite consensus disorder prediction 711 732 - -
Phac9g03746 732 CDD SF2_C_RecQ 230 363 - -
Phac9g03746 732 FunFam RecQ family DNA helicase 230 455 - -
Phac9g03746 732 Gene3D - 2 229 IPR027417 -
Phac9g03746 732 MobiDBLite consensus disorder prediction 702 732 - -
Phac9g03746 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 374 IPR027417 -
Phac9g03746 732 PANTHER DNA HELICASE RECQ FAMILY MEMBER 16 605 - -
Phac9g03746 732 Pfam DEAD/DEAH box helicase 43 209 IPR011545 GO:0003676|GO:0005524
Phac9g03746 732 MobiDBLite consensus disorder prediction 644 677 - -
Phac9g03746 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Phac9g03746 732 Pfam RecQ zinc-binding 367 438 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03746 Phac-Chr9 36509402 36517796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03746 33 374 Eukaryotic Initiation Factors Gene Family AT3G19760 22.192 1.65e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03746 K10901 - gmx:100819601 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g03746 9 36509402 36517796 Phac9g03746 9 36509402 36517796 ECH