Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03722 ATGGGGACGAAGAAGCTTAGCGAGGGAGTGAAAAGCGAGGGTAATGGCAGCAACGACAACGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTGTGTGAACAACTTCGTGAGAGGTTGGGGTTTGAAGTTCCGACGCAGGTGCAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCATTGGTAAATGCTGCAACGGGCACGGGGAAGACTGCTGCGTATCTCGCTCCGATTGTTCATCACTTGCAGGGTTATGAAAATCGGATTCAGCGCTCTGATGGGACATTTGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGGTTCCATTGGATTGTTCCAGGATACATTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTAATAGCAACTCCTGGGCGTCTTTTGGATCACTTAAAGAATACAACATCATTCTTGCACTCAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGAATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCGAGGAAAACACTGCATGATGACCAAGAGAATACAGTTCCAAGAAACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCTACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTGGAAAATCCAGTGATGGTTGGTCTTGATGTGAAGAAAATAGAACAACTTTCAACACCTGTAAGCAATGATCATTCAGAATCTGATGAAGATAATGAAGACCAGTATTCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTTCCTATACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGGACACGGCTACCTGTACTTCTTTCAATTTTAAAGCATCTCTTTGATAGGGAACCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCTGTAGATTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCCATTCACAAACAGAAGGGACCCGACAGAAGTTTCTTGGATGCAAAATTTTTCGGTTACATGGTAATATGGTGCAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTTTACTTTTGACTAGTGATGTTTCTGCTAGAGGCCTGGATATTCCCAAGGTTAGATGCATCATACAATATGATTCTCCTGGGGAAGCTACGGAATATGTTCATAGGGTTGGTAGAACTGCTCGACTGGGTGAAAAAGGAGAGTCGTTGCTTTTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAACACATGGTGTCTCACTCACAGAGTATCCTGTCCTCAAAATGTTGGATAGTTTTCCACTATATGGACAAAAGAACTACGTAAAGAAGTCAGTGTTCTTAGATTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCTTTCATCATGTCGAAGCCCGAGGTGGATAAACTTGCCAAGAAGGCATTTTGCTCTTGGGTTCGCGCATACACTGCCCATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCTTCCTTAGTTGGACAGTCATTCCAAAAGCAAGAAAAGAAAAGAAAGCGATTTGAGAAGAAAACTGGGTTCTCAAAAAAGAGAAAAGTTGCGAGTGTGAGAGAACGCAGACCATGA 1797 0.4151 MGTKKLSEGVKSEGNGSNDNVFASCSFSSLGLDSNLCEQLRERLGFEVPTQVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTLHDDQENTVPRNSKIQRQNLLLSATLNEKVNHLAKISLENPVMVGLDVKKIEQLSTPVSNDHSESDEDNEDQYSSKMPTVGDYKVPIQLIQRYMKVPCGTRLPVLLSILKHLFDREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSHSQTEGTRQKFLGCKIFRLHGNMVQEDRRTSFQTFKTEKSALLLTSDVSARGLDIPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLETHGVSLTEYPVLKMLDSFPLYGQKNYVKKSVFLDSHPWVLCLQKALEAFIMSKPEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQEKKRKRFEKKTGFSKKRKVASVRERRP* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03722 598 MobiDBLite consensus disorder prediction 566 598 - -
Phac9g03722 598 CDD SF2_C_DEAD 298 447 - -
Phac9g03722 598 MobiDBLite consensus disorder prediction 265 286 - -
Phac9g03722 598 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Phac9g03722 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 486 IPR027417 -
Phac9g03722 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Phac9g03722 598 Gene3D - 309 590 IPR027417 -
Phac9g03722 598 Pfam Domain of unknown function (DUF4217) 502 562 IPR025313 -
Phac9g03722 598 Gene3D - 3 256 IPR027417 -
Phac9g03722 598 CDD DEADc_DDX31 36 254 - -
Phac9g03722 598 SMART ultradead3 45 263 IPR014001 -
Phac9g03722 598 PANTHER RNA HELICASE 24 569 - -
Phac9g03722 598 FunFam RNA helicase 3 255 - -
Phac9g03722 598 SMART helicmild6 356 438 IPR001650 -
Phac9g03722 598 Pfam DEAD/DEAH box helicase 50 241 IPR011545 GO:0003676|GO:0005524
Phac9g03722 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Phac9g03722 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 485 IPR001650 -
Phac9g03722 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 253 IPR027417 -
Phac9g03722 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Phac9g03722 598 SMART DUF4217_3 500 565 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03722 Phac-Chr9 36273546 36279174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03722 17 470 Eukaryotic Initiation Factors Gene Family AT3G19760 26.030 7.00e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03722 K14806 - gmx:100805157 1046.19