Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03699 ATGTTCAATCCTCAAACCTCCCCGCCGCCGCTGCCGGTGATGACTCCGCCGGCAACCCCCCTTAACTATGAAACGGCATCGCACAAGAAAAATCGCAGAACCACCGGAGTTCCTGTTCCTCTTCCTCATTCAGTGGAAGTGATCGACGTTGACGATTTCACTCCCTCCTCCTTTTTCACGCCCATTTCCTTCCGAGGCACGATCAAGTCAAACGTCGTCTCCGTGGACACACATGACGGTGCTTCCAAACCTGTCGACATCGTCGACCTCTCCGACACCGAGGACGACGATGATCTCCGTATCCTCAATTTCATTCCCGCAAGCACCTCCTTTGGCAAACGGAAAAGGTTCACGGGAGAATCCTCCAAGGCAGTCCCCTTCGTCTGCGAAATCTGCACTGAAAACAAAAGCTCCAGCGAAGCTTTCTCCATCAACGGCTGCTGCCACGTCTACTGCAAACACTGCATCGCTCTCTATGTCGAATCAAAGCTCCAGGATAACGTCGTCAACATAGGCTGCCCTGTGCCGCGATGCAGGGGATTACTGGAAGCGGAAGATTGCCGCTCGATTCTTGCCCCTGAGATTTTGGATCGGTGGGGTAAAGCGCTGTGCGAGGCGGTGATTTCTGTGGAGGAGAAGTTCTATTGTCCTTTTCCAGATTGCTCTGTGCTGTTGATTCGCGAGGAGAAGGATGAGGGTATCAGAGAATCGAATTGTCCAAACTGTCGGAGGGTGTTCTGTGCGATGTGTAGAGTACCCTGGCACGAGGACATATCCTGTGAGGAGTTTCAAAAGCTGAACGCCGAAGAGAGGGGAAGAGAAGATGTGATGTTGAGAAACCTTGCTAAGCAAATGATGTGGAAGAGATGCCCCACTTGTGGGTTTTACGTTGCCAAAACCTCTGGCTGCATGTACATGAAATGCAGGTGTGGGAGTGCCTTCTGTTACAACTGTGGGGTTCCTAACTCAAATTCCTCCCATTATTGCACGTCCTGTAGACGGTAA 1005 0.5164 MFNPQTSPPPLPVMTPPATPLNYETASHKKNRRTTGVPVPLPHSVEVIDVDDFTPSSFFTPISFRGTIKSNVVSVDTHDGASKPVDIVDLSDTEDDDDLRILNFIPASTSFGKRKRFTGESSKAVPFVCEICTENKSSSEAFSINGCCHVYCKHCIALYVESKLQDNVVNIGCPVPRCRGLLEAEDCRSILAPEILDRWGKALCEAVISVEEKFYCPFPDCSVLLIREEKDEGIRESNCPNCRRVFCAMCRVPWHEDISCEEFQKLNAEERGREDVMLRNLAKQMMWKRCPTCGFYVAKTSGCMYMKCRCGSAFCYNCGVPNSNSSHYCTSCRR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03699 334 ProSiteProfiles Zinc finger RING-type profile. 129 177 IPR001841 -
Phac9g03699 334 MobiDBLite consensus disorder prediction 1 17 - -
Phac9g03699 334 Pfam IBR domain, a half RING-finger domain 205 260 IPR002867 GO:0008270
Phac9g03699 334 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Phac9g03699 334 Gene3D - 262 334 - -
Phac9g03699 334 CDD Rcat_RBR_unk 286 322 - -
Phac9g03699 334 Gene3D - 214 261 - -
Phac9g03699 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 211 IPR013083 -
Phac9g03699 334 SUPERFAMILY RING/U-box 271 332 - -
Phac9g03699 334 FunFam RBR-type E3 ubiquitin transferase 262 334 - -
Phac9g03699 334 SUPERFAMILY RING/U-box 203 265 - -
Phac9g03699 334 FunFam RBR-type E3 ubiquitin transferase 124 210 - -
Phac9g03699 334 MobiDBLite consensus disorder prediction 1 38 - -
Phac9g03699 334 CDD BRcat_RBR_unk 212 263 - -
Phac9g03699 334 SUPERFAMILY RING/U-box 127 206 - -
Phac9g03699 334 ProSiteProfiles TRIAD supradomain profile. 125 334 IPR044066 -
Phac9g03699 334 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 330 IPR031127 GO:0004842|GO:0016567
Phac9g03699 334 SMART ibrneu5 197 260 IPR002867 GO:0008270
Phac9g03699 334 SMART ibrneu5 270 332 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03699 Phac-Chr9 36096122 36098217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03699 129 321 C3H Transcription Factor Family AT2G19610 32.195 1.73e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03699 K11975 - gmx:100803898 443.351