Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03623 ATGGAGCAGTTGAAATTGGCTACAAATTCTGACGCCAAAGAGGATAACCCTTTGGGGAGCAAGCCAAAAAATAGCAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGGTATCAGCTCGATGGGATCCAGTTGGAGCATGTCGGCCAATAATTGAAGAAGCACCTGTTTTTTATCCAACTCTCGAAGAATTTGAAGACACACTCAGTTACATAGCAAAGATACGACCCCTAGCTGAACCCCATGGCATATGTAGAATTGTTCCTCCAGCTTGCTGGGTTCCACCCTGTCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCTATGAGGAAAAAGTGCAGGGGAAGGAAGCGAAAACGTAGAAGGCTCTCTAAAACAGGCACATGTAGGAGGAAGCCTGCCAATGCAGCTTCTCAAGCTAAGAATGCGTCTGATTCTGAGGAGAAATTTGGGTTCCAATCAGGATCGGACTTCACGCTTAAAGACTTTCAGCAATATGCTGATTATTTTAAGGAATGCTATTTTGGGTTGAAAGATGCTGATAGAGAAAGAACAGTTGGTGACAGTAACCATCAGAAGAGATGGGAGCCCTCTGAGGAAGAAATTGAAGGTGAATACTGGCGAATTGTTGGGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATAACTACGAGTGACTCAGCTCAATATGCCCTGTCTGGTTGGAATCTGAACAATTTCCCGCGACTGCCAGGTTCTGTACTAAGCTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCGTGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTTTACTCACTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGAGTACCTGGAAGCCAGGCATCAGCCTTGGAAAATGCAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTAAATGAACTGGTTACCCAGTTTTCTCCTTCTATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACGTTTCCAAGGGCATATCATTCTGGCTTCAATTGTGGCTTCAATTGTGCTGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTTGAGCTTTACAGTTTACAATGCCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCTGCACTGGAAGCTGTACGGGCCATTACAGAGCTAGCTCTTGGAAATGAATCCCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGAGATCTTACGAAGGCAGTTAAGGCAAGGATAAAGATGGAAGATGAAAGGCTAGATTGTCTTCCAACTCATCTTAAGTTGCTCAAGATGAACAGTGACTTTGATTTGCACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCAGTGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAATTTGCTCTGCTCATGCGGAATGGAGAAAAAAATTGTTCTGCTACGATATACTAGAAATGAGCTAACTAAACTGCTTGAAGCATTAGAAGGAGAATCACATGCTATTAAGGTGTGGGCAAATAAAAACTGTGGAATGGTTTCTGCCAATGTCAGTGAGGTTTGCGTAGATAAATCAAACGTTGAGAAAGATATCTACAAAACCAATAATTGTGAAGAAATGGATAGCTTATCTGGCTGTGAAAGAACCAAGGATAGGTCAAATTTAAACACATCATGTAGTCCTAATAGTCATATTACTTCTGAGATAGTGCAGTCTGAGTCTCACCCTGTAACTTCTAGTGCAACATATGACAGTATAGATAGTCACAATGACAACAATAGTGATAAAAAGTCTGACACTGACAAGGAAGATAAAATGGATCAGGATGGTTATCTGGATTTGAATCTTGATGTTTTCTCTGGTGAAAATGAAAATCATGTGCTGGATATTGCTGATAATCATCACAACCAAGGTGTTTCAGTAGAGCAAAAAGTATGCTGTTCAGAGGCCAAAAAGGAAGAAGACAGCATGGCACTTTGTGGTGAGGGTAACTTGTCAAACTCGTTTTCTGTTCTAAACACAGATTTCTCGTCAAGTTCAAGGGGTGTTCCCAATTATTGTACATTTGATGGTGGAAAAATTGAGCTGGATCTGCAAACAGATTCAGGGAAGCTTCACAACAATCTATTTACAAAAGGAGTCATAGACACTAGAGATACTCCCATGGATTTGACTGATGAAAGCTGCTTGGTGCGAATGTTTAGTACTTCTGTCCAGCCTGTAAGTCTGGGATCTGTTGTTCATGGAAAGCTGTGGTGCAGTAAGCAGGCAATATATCCAAAGGGATTCAAGAGTAGAGTTCTCTTCTTTAGCATTCTTGATCCAACGATAATCTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCATGGAAGAATATCCAAGTGAGGCTTTCACCGATATCTCATCAGATAATTGCTGGGAATCAGTTCTGAAGAGATTACATCAGGAAATCAAGAGGCGGAGGAGTCTAGGTGAACTAGAACTTCCTACCTTAGAGCTCCTGAAAAGCATTAATGGTCATAGAATGTTTGGCTTCCTTTTACCATCTATTATTCAGGCCATCGAAGTTCAAGATCCCTGTCATATGTGTGTAGAGTACTGGAATCACAAAGTTGCCCCTTCAGGCAGTGTTGTTGATAACTTCACCTACGGTTCCAGAAGCCCTTTCGGTAATATCAATACCAAAATTTTTGGTATCAATTTGATTAAGCATAGCTTCCTTGGAGAGATGAAACCAATACTACAAAGGGCAACCCCTGATGAGTTAAGCACACTGCATAAGTTACTGATCTCTGATGCAAGGTGCTGTGAGTGGAAATTGACATTAATGGCACTGATGGATGAGATCCGAAAAGCTTGTCAATGA 3138 0.4156 MEQLKLATNSDAKEDNPLGSKPKNSNALESSDSLRNRKVSARWDPVGACRPIIEEAPVFYPTLEEFEDTLSYIAKIRPLAEPHGICRIVPPACWVPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMRKKCRGRKRKRRRLSKTGTCRRKPANAASQAKNASDSEEKFGFQSGSDFTLKDFQQYADYFKECYFGLKDADRERTVGDSNHQKRWEPSEEEIEGEYWRIVGQPSDEVEVYYGADLETGALGSGFPKASSITTSDSAQYALSGWNLNNFPRLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSQASALENAMRKHLPDLFEEQPNLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRAITELALGNESPKNLKWRSVCGKDGDLTKAVKARIKMEDERLDCLPTHLKLLKMNSDFDLHTERECFSCFYDLHLSAVGCECSPDRYSCLKHANLLCSCGMEKKIVLLRYTRNELTKLLEALEGESHAIKVWANKNCGMVSANVSEVCVDKSNVEKDIYKTNNCEEMDSLSGCERTKDRSNLNTSCSPNSHITSEIVQSESHPVTSSATYDSIDSHNDNNSDKKSDTDKEDKMDQDGYLDLNLDVFSGENENHVLDIADNHHNQGVSVEQKVCCSEAKKEEDSMALCGEGNLSNSFSVLNTDFSSSSRGVPNYCTFDGGKIELDLQTDSGKLHNNLFTKGVIDTRDTPMDLTDESCLVRMFSTSVQPVSLGSVVHGKLWCSKQAIYPKGFKSRVLFFSILDPTIICSYISEVIDAGFLGPLFKVTMEEYPSEAFTDISSDNCWESVLKRLHQEIKRRRSLGELELPTLELLKSINGHRMFGFLLPSIIQAIEVQDPCHMCVEYWNHKVAPSGSVVDNFTYGSRSPFGNINTKIFGINLIKHSFLGEMKPILQRATPDELSTLHKLLISDARCCEWKLTLMALMDEIRKACQ* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03623 1045 Pfam F/Y rich C-terminus 873 961 IPR003889 GO:0005634
Phac9g03623 1045 MobiDBLite consensus disorder prediction 13 34 - -
Phac9g03623 1045 SMART fyrn_3 825 869 IPR003888 GO:0005634
Phac9g03623 1045 ProSiteProfiles FYR domain FYRC motif profile. 871 961 IPR003889 GO:0005634
Phac9g03623 1045 SMART fyrc_3 875 967 IPR003889 GO:0005634
Phac9g03623 1045 MobiDBLite consensus disorder prediction 1 34 - -
Phac9g03623 1045 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Phac9g03623 1045 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Phac9g03623 1045 FunFam Putative lysine-specific demethylase JMJ16 817 955 - -
Phac9g03623 1045 Pfam F/Y-rich N-terminus 822 866 IPR003888 GO:0005634
Phac9g03623 1045 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 735 - -
Phac9g03623 1045 MobiDBLite consensus disorder prediction 129 146 - -
Phac9g03623 1045 Gene3D - 815 955 - -
Phac9g03623 1045 MobiDBLite consensus disorder prediction 630 669 - -
Phac9g03623 1045 MobiDBLite consensus disorder prediction 129 166 - -
Phac9g03623 1045 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Phac9g03623 1045 SMART JmjN_1 55 96 IPR003349 -
Phac9g03623 1045 SMART cupin_9 265 431 IPR003347 -
Phac9g03623 1045 Pfam jmjN domain 57 90 IPR003349 -
Phac9g03623 1045 ProSiteProfiles FYR domain FYRN motif profile. 811 869 IPR003888 GO:0005634
Phac9g03623 1045 Gene3D Cupin 41 415 - -
Phac9g03623 1045 MobiDBLite consensus disorder prediction 149 166 - -
Phac9g03623 1045 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Phac9g03623 1045 MobiDBLite consensus disorder prediction 670 688 - -
Phac9g03623 1045 SUPERFAMILY Clavaminate synthase-like 266 450 - -
Phac9g03623 1045 MobiDBLite consensus disorder prediction 628 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03623 Phac-Chr9 35473668 35481919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03623 815 993 JUMONJI Transcription Factor Family AT1G30810 50.279 2.10e-48 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac9g03623 JmjC 7.1e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03623 K11446 - gmx:100801775 1751.49