Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03621 ATGAGGAGCCAACTGGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCACCACCGTTTCCTCTGTTCCTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACGCACGTGGTGCTTCAAGTGTGAGATGTTCCTGCTGTTACACTATAAACCTTGTACCCGAATGTAATCAAGTCAGCCATATCCATTGTGTGAACTGCCGGACCACACTCATGTATCCTTTTGGAGCTCCCTCAGTCAAATGTGCGATTTGTCACTATATTACTAATGTCAGTATGACCAATGGAAGGCTTCCAGTTCCTGTACAGAGACCAAATGGAACAGTATCTACTACTTCATCATCAATGCCTCATTCTCAGAGTCAAACTGTCGTAGTAGAAAATCCTATGTCTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACTGATAAGAAATGA 516 0.438 MRSQLVCNGCRNILVYPRGATNVCCALCTTVSSVPPPGMEMSQLYCGGCRTLLMYARGASSVRCSCCYTINLVPECNQVSHIHCVNCRTTLMYPFGAPSVKCAICHYITNVSMTNGRLPVPVQRPNGTVSTTSSSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03621 171 PANTHER PROTEIN LSD1 3 170 IPR040319 -
Phac9g03621 171 Pfam LSD1 zinc finger 7 31 IPR005735 -
Phac9g03621 171 Pfam LSD1 zinc finger 46 70 IPR005735 -
Phac9g03621 171 Pfam LSD1 zinc finger 84 108 IPR005735 -
Phac9g03621 171 NCBIfam zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Phac9g03621 171 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Phac9g03621 171 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03621 Phac-Chr9 35455411 35460791 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phac9g03621 zf-LSD1 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03621 - K12191 gmx:100792570 300.827